Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20017
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr...    30   0.99 
Z81568-15|CAB04595.2|  610|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z81568-14|CAB04591.2|  608|Caenorhabditis elegans Hypothetical p...    29   1.7  

>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical protein
            F21G4.6 protein.
          Length = 1885

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 15/57 (26%), Positives = 21/57 (36%)
 Frame = -3

Query: 306  CSFAHCRRCVLYASLIRACFQLKSPTFRKRIECPCKVQAALGWNILREVLDSPTQEC 136
            C  AH R    ++  + ACF  + P        P        W  + E+L  PT  C
Sbjct: 1282 CQEAHLRHSKRFSKTLSACF--RHPILNSMFNIPLVAMKCFNWVPVVEILRKPTITC 1336


>Z81568-15|CAB04595.2|  610|Caenorhabditis elegans Hypothetical
           protein K08E3.3b protein.
          Length = 610

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 221 FRKVGLFN*KQALIKEAYKTHLRQWAKEH 307
           F K+G F+ ++A I+E Y T LR  AK++
Sbjct: 28  FEKLGQFSKEKAAIEEEYSTKLRSLAKKY 56


>Z81568-14|CAB04591.2|  608|Caenorhabditis elegans Hypothetical
           protein K08E3.3a protein.
          Length = 608

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 221 FRKVGLFN*KQALIKEAYKTHLRQWAKEH 307
           F K+G F+ ++A I+E Y T LR  AK++
Sbjct: 28  FEKLGQFSKEKAAIEEEYSTKLRSLAKKY 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,687,240
Number of Sequences: 27780
Number of extensions: 279057
Number of successful extensions: 781
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)