Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20017
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.69 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.4  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 234 PTFRKRIECPCKVQAALGWNILREVLDSPTQEC 136
           PT R   +  C V+A   +N+L ++ ++ + +C
Sbjct: 100 PTARSLEKLLCNVEAEENYNLLEDIYETLSYDC 132


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/14 (71%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = -1

Query: 335 PSPRPLTNP-RALS 297
           PSPRPL  P +ALS
Sbjct: 884 PSPRPLVGPCKALS 897


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 506 KEFNRYNGIVRVIPFSRSNV 447
           KE   YN +V V PF  SNV
Sbjct: 609 KEGMPYNVLVVVSPFDDSNV 628


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 506 KEFNRYNGIVRVIPFSRSNV 447
           KE   YN +V V PF  SNV
Sbjct: 609 KEGMPYNVLVVVSPFDDSNV 628


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,311
Number of Sequences: 438
Number of extensions: 3214
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)