Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20017
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35780.1 68417.m05080 protein kinase family protein similar t...    29   2.8  
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam...    28   4.9  
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ...    28   4.9  
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil...    28   4.9  
At1g54890.1 68414.m06267 late embryogenesis abundant protein-rel...    27   6.5  
At5g64860.1 68418.m08159 4-alpha-glucanotransferase, putative / ...    27   8.6  

>At4g35780.1 68417.m05080 protein kinase family protein similar to
           protein kinase [gi:170047] from Glycine max,
           [gi:13124865] from Arachis hypogaea; contains Pfam
           protein kinase domain PF00069
          Length = 570

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 308 EGWSVAVEKAISDCVDKDLRQYLEFPCS 391
           +GWS    + + D + K++R++ + PCS
Sbjct: 226 DGWSQEETEGLKDALKKEIRKFKDQPCS 253


>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
           protein contains G-protein beta WD-40 repeats
          Length = 539

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 197 TLQGHSMRFRKVGLFN*KQALIKEAYKTHLRQWAKEHEGWSVAVEKAI 340
           TL GH+   R V L    + +    Y + +R W  E EG S+A  K +
Sbjct: 157 TLYGHTEAVRTVFLLASAKLVFTSGYDSIVRMWDME-EGLSIAASKPL 203


>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
           WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
           contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
          Length = 711

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = -1

Query: 164 RFWIPQLRNVTARRNWFQSCFRCLSYCK------NCK*DTNFHFYDFS 39
           ++W   + NV A +   +   R LS+CK      +C  DT    +DF+
Sbjct: 190 KYWQNNMNNVKANKTAHKESIRDLSFCKTDLKFCSCSDDTTVKVWDFT 237


>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
            protein / CHD family protein similar to SP|O14647
            Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
            sapiens}; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00385: 'chromo' (CHRromatin
            Organization MOdifier)
          Length = 1722

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 241  KKPDFSKTH*MSLQGPGSFGLEHSARGSGFP 149
            ++P  + ++ + + GPG     H AR +GFP
Sbjct: 1690 ERPTITNSNSLGILGPGPLDRSHRARQTGFP 1720


>At1g54890.1 68414.m06267 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein (EMB7) GI:1350543 from
           [Picea glauca]
          Length = 347

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 258 RACFQLKSPTFRKRIECP 205
           + CFQ KSP F K+  CP
Sbjct: 33  KTCFQRKSPCFLKKQTCP 50


>At5g64860.1 68418.m08159 4-alpha-glucanotransferase, putative /
           disproportionating enzyme, putative similar to
           4-alpha-glucanotransferase SP:Q06801 from [Solanum
           tuberosum]
          Length = 576

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 303 STRVGQWPWRRPSATALTKI 362
           +T VG W WR PS+T+   +
Sbjct: 540 ATEVGNWGWRIPSSTSFDNL 559


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,829,597
Number of Sequences: 28952
Number of extensions: 252200
Number of successful extensions: 755
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)