Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20016
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30272| Best HMM Match : GDI (HMM E-Value=0) 110 8e-25
SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 2e-21
SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14) 44 8e-05
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 39 0.003
SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1) 30 1.9
SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13) 29 4.3
SB_43720| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.5) 28 5.7
SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_33026| Best HMM Match : Ras (HMM E-Value=3.7e-08) 28 7.5
>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
Length = 1199
Score = 110 bits (265), Expect = 8e-25
Identities = 51/86 (59%), Positives = 69/86 (80%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKF-NAPAPDETYGRGRDWNVDLI 177
+LSG+LS++ KKVLH+DRNKYYGG+ AS+ PL +L+ F P ++ G+ RD+NVDLI
Sbjct: 18 VLSGLLSLNKKKVLHMDRNKYYGGDCASLHPLNQLYETFGRTDFPGDSLGKPRDYNVDLI 77
Query: 178 PKFLMANGLLVKLLIHTGV-TRYLEF 252
PKFLMA+G LVK+L+HTGV T+Y+ F
Sbjct: 78 PKFLMADGTLVKILVHTGVATKYMNF 103
Score = 105 bits (253), Expect = 2e-23
Identities = 48/90 (53%), Positives = 63/90 (70%), Gaps = 5/90 (5%)
Frame = +3
Query: 258 IEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKD---- 425
IEGS+VY+GG + KVP ++KEAL S LMG+FEKRRFRNFLI+ + E+A TWKD
Sbjct: 106 IEGSFVYRGGSVHKVPANEKEALNSSLMGIFEKRRFRNFLIFALGVEPENASTWKDYAGG 165
Query: 426 -FDPSTANMQSLYDKFGLDRNTQDFTGHAL 512
FDP M ++ + L ++T DFTGHA+
Sbjct: 166 NFDPKKTTMNDVFKAYDLSQDTADFTGHAI 195
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +2
Query: 509 LALYLDDNYLQQPAIQTIRRIKLYSDSLAKYGKS 610
+ALY DD Y+ +P + I RIKLY SL+KYG S
Sbjct: 195 IALYRDDEYMSKPCEEAIMRIKLYYQSLSKYGGS 228
>SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 99 bits (238), Expect = 2e-21
Identities = 46/72 (63%), Positives = 56/72 (77%), Gaps = 4/72 (5%)
Frame = +1
Query: 1 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDE----TYGRGRDWNV 168
ILSG LSV+GKKVLH+D K+YGGE+AS+TPL +LF KFN P E +GR RDWNV
Sbjct: 21 ILSGALSVAGKKVLHMDSQKFYGGETASLTPLSQLFDKFNRSMPKEEIEKRFGRERDWNV 80
Query: 169 DLIPKFLMANGL 204
DL+PKF+MA G+
Sbjct: 81 DLVPKFIMAGGI 92
>SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)
Length = 175
Score = 44.4 bits (100), Expect = 8e-05
Identities = 18/34 (52%), Positives = 28/34 (82%)
Frame = +2
Query: 509 LALYLDDNYLQQPAIQTIRRIKLYSDSLAKYGKS 610
+AL ++D+Y QP QT+ +IKLY++SL++YGKS
Sbjct: 22 MALEINDSYKDQPFGQTVEKIKLYNESLSRYGKS 55
Score = 36.3 bits (80), Expect = 0.021
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 447 MQSLYDKFGLDRNTQDFTGHAL 512
M +Y KFGLD NT DF GHA+
Sbjct: 1 MTEVYQKFGLDANTADFVGHAM 22
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 154 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFNPSKEVM 273
R +N+DL PK L++ G LV+ LI ++ Y EF +++
Sbjct: 323 RQFNIDLAPKLLLSRGALVESLISANISHYAEFKAVNQIL 362
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 1 ILSGMLSVSGKKVLHIDRNKYYGGESASIT 90
+++ LS G KVLH+DRN YY + AS T
Sbjct: 21 VVAAALSRIGLKVLHLDRNDYYSSQWASFT 50
>SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 882
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 251 LIHRRKLCLQRWKNLQSTCRSERSSCV*SYGHV*EEAFPQLLNLRSRFPGRRCQDMEG 424
L+H + CL K+ ++ S+ + SYG + P LL + +RF C +EG
Sbjct: 344 LMHHIRNCLPELKSRVNSMTSQYHHLLQSYGEPVMDKGPYLLQMITRFAATYCSIIEG 401
>SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -3
Query: 178 ESSQRSSLDLDRMFHQV-PVR*T*RTAPLTG*LTQIHHRSTYCDRCAKPSS 29
+++Q + D+D + P++ T +P TG + +H ++T DR A+P+S
Sbjct: 260 DNTQANVTDIDEAIAKARPIKITEDASPTTG-TSGVHQKATVIDRAARPAS 309
>SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1)
Length = 576
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 511 KACPVKSWVFLSNPNLSYSDCMFAVEGSKS 422
+ C W F+S P++ Y + F V GSKS
Sbjct: 113 RVCVHNGWTFVSEPHMVYLEPEFEVGGSKS 142
>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
Length = 1297
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 227 RASPG-TWSLIHRRKLCLQRWKNLQSTCRSERSSC 328
R SPG WS+ R + CL + KN ++ S + SC
Sbjct: 164 RRSPGRVWSVCSRERSCLGKCKNPPASSVSHQLSC 198
>SB_43720| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.5)
Length = 106
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/76 (27%), Positives = 33/76 (43%)
Frame = -1
Query: 447 CLQLRDQNPSMSWHLLPGNLERRLRSCGNASSQTCP*DQTQELLSDRQVLWRFFHLCKHN 268
C ++ P W +LPGN RRL G +T Q L + F+LC++
Sbjct: 30 CPKMGSSVPISLWQMLPGNFMRRLIPDG----ETVEKYDNQFTLHRISRQYAGFYLCRYG 85
Query: 267 FLRWIKLQVPGDARVN 220
++ Q G+ RV+
Sbjct: 86 SNGRLRNQFLGNVRVD 101
>SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/76 (27%), Positives = 33/76 (43%)
Frame = -1
Query: 447 CLQLRDQNPSMSWHLLPGNLERRLRSCGNASSQTCP*DQTQELLSDRQVLWRFFHLCKHN 268
C ++ P W +LPGN RRL G +T Q L + F+LC++
Sbjct: 55 CPKMGSSVPISLWQMLPGNFMRRLIPDG----ETVEKYDNQFTLHRISRQYAGFYLCRYG 110
Query: 267 FLRWIKLQVPGDARVN 220
++ Q G+ RV+
Sbjct: 111 SNGRLRNQFLGNVRVD 126
>SB_33026| Best HMM Match : Ras (HMM E-Value=3.7e-08)
Length = 155
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 291 ISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSL 458
+S+V + LA +L G+F + + VQ+ EE KTW D A +L
Sbjct: 98 LSQVLEYEGRFLAQELDGLFVQVSISEGYVEVQELLEEGIKTWLQRDVERARGSAL 153
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,175,978
Number of Sequences: 59808
Number of extensions: 443730
Number of successful extensions: 1092
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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