Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20016
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical p... 148 3e-36
Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical p... 148 3e-36
U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein. 148 3e-36
AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical ... 37 0.014
AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical ... 37 0.014
U97007-7|AAB52292.1| 441|Caenorhabditis elegans Hypothetical pr... 29 3.8
M11498-1|AAA28163.1| 282|Caenorhabditis elegans protein ( C.ele... 27 8.7
AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin ... 27 8.7
AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin ... 27 8.7
>Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical
protein Y57G11C.10b protein.
Length = 459
Score = 148 bits (359), Expect = 3e-36
Identities = 70/86 (81%), Positives = 76/86 (88%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA--PDETYGRGRDWNVDL 174
I+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P P + GRGRDWNVDL
Sbjct: 18 IISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQAKPQQEMGRGRDWNVDL 77
Query: 175 IPKFLMANGLLVKLLIHTGVTRYLEF 252
IPKFLMANG LVKLLIHTGVTRYLEF
Sbjct: 78 IPKFLMANGPLVKLLIHTGVTRYLEF 103
Score = 124 bits (299), Expect = 5e-29
Identities = 55/86 (63%), Positives = 65/86 (75%)
Frame = +3
Query: 255 SIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDP 434
SIE S+V KGGKI KVP D+ EALA+ LMGMFEKRRF+ FL++VQ F E TW+ DP
Sbjct: 105 SIEASFVVKGGKIYKVPADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDP 164
Query: 435 STANMQSLYDKFGLDRNTQDFTGHAL 512
+ MQ +Y+KFGLD NT DFTGHAL
Sbjct: 165 HNSTMQQVYEKFGLDENTADFTGHAL 190
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +2
Query: 509 LALYLDDNYLQQPAIQTIRRIKLYSDSLAKYGKS 610
LALY DD + QP + +I+LYSDSLA+YGKS
Sbjct: 190 LALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKS 223
>Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical
protein Y57G11C.10a protein.
Length = 444
Score = 148 bits (359), Expect = 3e-36
Identities = 70/86 (81%), Positives = 76/86 (88%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA--PDETYGRGRDWNVDL 174
I+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P P + GRGRDWNVDL
Sbjct: 18 IISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQAKPQQEMGRGRDWNVDL 77
Query: 175 IPKFLMANGLLVKLLIHTGVTRYLEF 252
IPKFLMANG LVKLLIHTGVTRYLEF
Sbjct: 78 IPKFLMANGPLVKLLIHTGVTRYLEF 103
Score = 124 bits (299), Expect = 5e-29
Identities = 55/86 (63%), Positives = 65/86 (75%)
Frame = +3
Query: 255 SIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDP 434
SIE S+V KGGKI KVP D+ EALA+ LMGMFEKRRF+ FL++VQ F E TW+ DP
Sbjct: 105 SIEASFVVKGGKIYKVPADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDP 164
Query: 435 STANMQSLYDKFGLDRNTQDFTGHAL 512
+ MQ +Y+KFGLD NT DFTGHAL
Sbjct: 165 HNSTMQQVYEKFGLDENTADFTGHAL 190
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +2
Query: 509 LALYLDDNYLQQPAIQTIRRIKLYSDSLAKYGKS 610
LALY DD + QP + +I+LYSDSLA+YGKS
Sbjct: 190 LALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKS 223
>U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein.
Length = 444
Score = 148 bits (359), Expect = 3e-36
Identities = 70/86 (81%), Positives = 76/86 (88%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA--PDETYGRGRDWNVDL 174
I+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P P + GRGRDWNVDL
Sbjct: 18 IISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQAKPQQEMGRGRDWNVDL 77
Query: 175 IPKFLMANGLLVKLLIHTGVTRYLEF 252
IPKFLMANG LVKLLIHTGVTRYLEF
Sbjct: 78 IPKFLMANGPLVKLLIHTGVTRYLEF 103
Score = 124 bits (299), Expect = 5e-29
Identities = 55/86 (63%), Positives = 65/86 (75%)
Frame = +3
Query: 255 SIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDP 434
SIE S+V KGGKI KVP D+ EALA+ LMGMFEKRRF+ FL++VQ F E TW+ DP
Sbjct: 105 SIEASFVVKGGKIYKVPADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDP 164
Query: 435 STANMQSLYDKFGLDRNTQDFTGHAL 512
+ MQ +Y+KFGLD NT DFTGHAL
Sbjct: 165 HNSTMQQVYEKFGLDENTADFTGHAL 190
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +2
Query: 509 LALYLDDNYLQQPAIQTIRRIKLYSDSLAKYGKS 610
LALY DD + QP + +I+LYSDSLA+YGKS
Sbjct: 190 LALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKS 223
>AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical
protein Y67D2.1b protein.
Length = 353
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +1
Query: 1 ILSGMLSVSGKKVLHIDRNKYYGGESASIT 90
IL+ + +G VLH+DRN+YYGG+ +S T
Sbjct: 22 ILASACARAGLSVLHLDRNEYYGGDWSSFT 51
Score = 33.9 bits (74), Expect = 0.100
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 154 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEF 252
R +++DL+PK L++ G +V+ L + V+ Y EF
Sbjct: 122 RRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEF 154
>AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical
protein Y67D2.1a protein.
Length = 510
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +1
Query: 1 ILSGMLSVSGKKVLHIDRNKYYGGESASIT 90
IL+ + +G VLH+DRN+YYGG+ +S T
Sbjct: 22 ILASACARAGLSVLHLDRNEYYGGDWSSFT 51
Score = 33.9 bits (74), Expect = 0.100
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 154 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEF 252
R +++DL+PK L++ G +V+ L + V+ Y EF
Sbjct: 122 RRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEF 154
>U97007-7|AAB52292.1| 441|Caenorhabditis elegans Hypothetical
protein ZC196.3 protein.
Length = 441
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 309 DQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDP-STANMQSLYDKFGL 476
++KE +D + K+ + FL Y +DFQ A+ WK F + ++Q Y++ +
Sbjct: 253 EEKEEKVADWIQNCYKQPIKRFLEYFRDFQNV-AREWKYFKRLPSESLQDAYEEISI 308
>M11498-1|AAA28163.1| 282|Caenorhabditis elegans protein (
C.elegans vitellogenin4 (yp170A) gene. ).
Length = 282
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +3
Query: 267 SYVYKGGKISKVPVDQKEALASDLMGMFE---KRRFRNFLIYVQDFQEEDAKTWKDFDPS 437
S++ + + K+ ++ L+ +L + E + + RN L+ F EDA+ K+ S
Sbjct: 80 SHIPQSEQWPKIESLEQRELSDELKELLELPFRAQIRNGLVSEIQFSSEDAEWSKNAKRS 139
Query: 438 TANMQSLYDKFGLDRNTQD 494
N+ SL +D +QD
Sbjct: 140 ILNLFSLRKSAPVDEMSQD 158
>AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 3 protein.
Length = 1603
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +3
Query: 267 SYVYKGGKISKVPVDQKEALASDLMGMFE---KRRFRNFLIYVQDFQEEDAKTWKDFDPS 437
S++ + + K+ ++ L+ +L + E + + RN L+ F EDA+ K+ S
Sbjct: 80 SHIPQSEQWPKIKSLEQRELSDELKELLELPFRAQIRNGLVSEIQFSSEDAEWSKNAKRS 139
Query: 438 TANMQSLYDKFGLDRNTQD 494
N+ SL +D +QD
Sbjct: 140 ILNLFSLRKSAPVDEMSQD 158
>AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 4 protein.
Length = 1603
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +3
Query: 267 SYVYKGGKISKVPVDQKEALASDLMGMFE---KRRFRNFLIYVQDFQEEDAKTWKDFDPS 437
S++ + + K+ ++ L+ +L + E + + RN L+ F EDA+ K+ S
Sbjct: 80 SHIPQSEQWPKIESLEQRELSDELKELLELPFRAQIRNGLVSEIQFSSEDAEWSKNAKRS 139
Query: 438 TANMQSLYDKFGLDRNTQD 494
N+ SL +D +QD
Sbjct: 140 ILNLFSLRKSAPVDEMSQD 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,534,499
Number of Sequences: 27780
Number of extensions: 328351
Number of successful extensions: 907
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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