Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20016
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1) i... 102 2e-22
At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2) i... 101 4e-22
At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putativ... 97 9e-21
At3g06540.1 68416.m00758 GDP dissociation inhibitor family prote... 33 0.22
At4g37190.1 68417.m05265 expressed protein 31 0.87
At4g02990.1 68417.m00406 mitochondrial transcription termination... 29 3.5
At3g01840.1 68416.m00125 protein kinase family protein contains ... 29 3.5
At2g10965.1 68415.m01171 hypothetical protein 29 3.5
At3g17830.1 68416.m02273 DNAJ heat shock family protein similar ... 28 4.7
At3g02280.1 68416.m00209 flavodoxin family protein low similarit... 28 4.7
At1g79020.1 68414.m09214 transcription factor-related similar to... 28 4.7
At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein ... 28 6.1
>At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1)
identical to GDP dissociation inhibitor [Arabidopsis
thaliana] GI:1655424
Length = 445
Score = 102 bits (245), Expect = 2e-22
Identities = 50/85 (58%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETY-GRGRDWNVDLI 177
ILSG+LSV G KVLH+DRN YYGGES S+ L +L+ KF + G RD+NVD++
Sbjct: 18 ILSGLLSVDGLKVLHMDRNDYYGGESTSLN-LNQLWKKFRGEEKAPAHLGSSRDYNVDMM 76
Query: 178 PKFLMANGLLVKLLIHTGVTRYLEF 252
PKF+MANG LV++LIHT VT+YL F
Sbjct: 77 PKFMMANGKLVRVLIHTDVTKYLSF 101
Score = 85.8 bits (203), Expect = 2e-17
Identities = 41/86 (47%), Positives = 53/86 (61%)
Frame = +3
Query: 255 SIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDP 434
+++GSYV+ GK+ KVP EAL S LMG+FEKRR F YVQ++ E+D KT D
Sbjct: 103 AVDGSYVFVQGKVQKVPATPMEALKSPLMGIFEKRRAGKFFSYVQEYDEKDPKTHDGMDL 162
Query: 435 STANMQSLYDKFGLDRNTQDFTGHAL 512
+ L KFGL +T DF GHA+
Sbjct: 163 RRVTTKDLIAKFGLKEDTIDFIGHAV 188
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/31 (51%), Positives = 26/31 (83%)
Frame = +2
Query: 509 LALYLDDNYLQQPAIQTIRRIKLYSDSLAKY 601
+AL+ +DN+L QPA T+ R+KLY++SLA++
Sbjct: 188 VALHCNDNHLHQPAYDTVMRMKLYAESLARF 218
>At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2)
identical to Rab GDP dissociation inhibitor AtGDI2
[Arabidopsis thaliana] GI:2446981
Length = 444
Score = 101 bits (242), Expect = 4e-22
Identities = 52/86 (60%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAP--APDETYGRGRDWNVDL 174
ILSG+LSV G KVLH+DRN YYGGES S+ L +L+ KF AP E G RD+NVD+
Sbjct: 18 ILSGLLSVDGVKVLHMDRNDYYGGESTSLN-LNQLWKKFRGEEKAP-EHLGASRDYNVDM 75
Query: 175 IPKFLMANGLLVKLLIHTGVTRYLEF 252
+PKF+M NG LV+ LIHT VT+YL F
Sbjct: 76 MPKFMMGNGKLVRTLIHTDVTKYLSF 101
Score = 88.2 bits (209), Expect = 4e-18
Identities = 41/86 (47%), Positives = 55/86 (63%)
Frame = +3
Query: 255 SIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDP 434
+++GSYV+ GK+ KVP EAL S LMG+FEKRR F +VQ++ E+D KT D
Sbjct: 103 AVDGSYVFVKGKVQKVPATPMEALKSSLMGIFEKRRAGKFFSFVQEYDEKDPKTHDGMDL 162
Query: 435 STANMQSLYDKFGLDRNTQDFTGHAL 512
+ + L K+GLD NT DF GHA+
Sbjct: 163 TRVTTKELIAKYGLDGNTIDFIGHAV 188
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/31 (48%), Positives = 25/31 (80%)
Frame = +2
Query: 509 LALYLDDNYLQQPAIQTIRRIKLYSDSLAKY 601
+AL+ +D +L QPA T+ R+KLY++SLA++
Sbjct: 188 VALHTNDQHLDQPAFDTVMRMKLYAESLARF 218
>At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putative
strong similarity to GDP dissociation inhibitor protein
OsGDI1 [Oryza sativa] GI:2384758; contains Pfam profile
PF00996: GDP dissociation inhibitor
Length = 365
Score = 97.1 bits (231), Expect = 9e-21
Identities = 45/86 (52%), Positives = 59/86 (68%)
Frame = +3
Query: 255 SIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDP 434
+++GS+VYK GKI KVP EAL S LMG+FEKRR R F IYVQD+ E+D K+ + D
Sbjct: 23 AVDGSFVYKKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQDYDEKDPKSHEGLDL 82
Query: 435 STANMQSLYDKFGLDRNTQDFTGHAL 512
S + + K+GL+ +T DF GHAL
Sbjct: 83 SKVTAREIISKYGLEDDTIDFIGHAL 108
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/31 (61%), Positives = 27/31 (87%)
Frame = +2
Query: 509 LALYLDDNYLQQPAIQTIRRIKLYSDSLAKY 601
LAL+ DD+YL QPAI ++RIKLY++SLA++
Sbjct: 108 LALHNDDDYLDQPAIDFVKRIKLYAESLARF 138
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 190 MANGLLVKLLIHTGVTRYLEF 252
MANGLLV+ LIHT VT+YL F
Sbjct: 1 MANGLLVQTLIHTDVTKYLNF 21
>At3g06540.1 68416.m00758 GDP dissociation inhibitor family protein
/ Rab GTPase activator family protein similar to
SP|P26374 Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) {Homo sapiens};
contains Pfam profile PF00996: GDP dissociation
inhibitor
Length = 563
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 1 ILSGMLSVSGKKVLHIDRNKYYGGESASIT-PLEELFAKFNAPAP 132
+L+ S SG VLH+D N +YG AS++ P F N+ +P
Sbjct: 28 VLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDLTSFLHSNSVSP 72
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 399 EEDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGHAL 512
+E+ + W DF S + QSLY+ GL ++Q F + +
Sbjct: 146 DEEVECWTDFSKSHYHPQSLYELNGLWMDSQAFNNYGI 183
>At4g02990.1 68417.m00406 mitochondrial transcription termination
factor family protein / mTERF family protein weak
similarity to mtDBP protein [Paracentrotus lividus]
GI:4584695; contains Pfam profile PF02536: mTERF
Length = 541
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -2
Query: 497 EILGVSI*PKLIVQRLHVCS*GIKILP-CLGIFFLEILNVD*EVAETPLLKHAHKIRRKS 321
EI+G+ + PKL QR +CS I + P LG +E + ++E+P+LKH + +
Sbjct: 349 EIIGIDLKPKLDTQRKLLCS-AIHLNPEDLG-SLIERMPQFVSLSESPMLKHIDFLTKCG 406
Query: 320 F 318
F
Sbjct: 407 F 407
>At3g01840.1 68416.m00125 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 654
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -1
Query: 477 LTQTYRTATACLQLRDQNPSMSWHLLPGNLERRL 376
++Q+ + T CL +R++NP +S L N++ RL
Sbjct: 124 VSQSLQGLTTCLSIREKNPHISEDKLGDNIKLRL 157
>At2g10965.1 68415.m01171 hypothetical protein
Length = 249
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +3
Query: 417 WKDFDPST--ANMQSLYDKFGLDRNTQDFTGHALP 515
WKD+ P A+ +D GLDR GH LP
Sbjct: 198 WKDWSPMKLKASQTVFFDSQGLDRECSLLGGHILP 232
>At3g17830.1 68416.m02273 DNAJ heat shock family protein similar to
SP|P35514 Chaperone protein dnaJ {Lactococcus lactis};
contains Pfam profiles PF00226: DnaJ domain, PF01556:
DnaJ C terminal region, PF00684: DnaJ central domain (4
repeats)
Length = 517
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 629 TMGKGKETYHTSLVNQNTT*CGEWSG*QAVANNYHP--NKGQGMSSEILGVS 480
TM G + Y T VN+N T S + +A YHP NK G + +S
Sbjct: 57 TMAAGTDHYSTLNVNRNATLQEIKSSYRKLARKYHPDMNKNPGAEDKFKQIS 108
>At3g02280.1 68416.m00209 flavodoxin family protein low similarity
to SP|Q05001 NADPH-cytochrome P450 reductase (EC
1.6.2.4) {Catharanthus roseus}, similar to
NADPH-dependent FMN and FAD containing oxidoreductase
[Homo sapiens] GI:6694369; contains Pfam profiles
PF00258: flavodoxin, PF00667: FAD binding domain,
PF00175: Oxidoreductase NAD-binding domain
Length = 623
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Frame = +3
Query: 291 ISKVPVDQKE--ALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYD 464
I+++P+ K L D+ +R F + + + E + + S LY+
Sbjct: 306 ITQIPIKLKTFVELTMDVTSASPRRYFFEIMSFYATAEHEKERL--QYFASPEGRDDLYN 363
Query: 465 KFGLDRNT-----QDFTGHALPFIWMIIICNSLLSRPFAASSCILIH 590
+R + +DF +PF W++ + L R F+ SS L H
Sbjct: 364 YNQKERRSILEVLEDFPSVQIPFDWLVQLVPPLKPRAFSISSSPLAH 410
>At1g79020.1 68414.m09214 transcription factor-related similar to
enhancer of polycomb (GI:3757890) [Drosophila
melanogaster]; similar to enhancer of polycomb
(GI:11907923) [Homo sapiens]
Length = 453
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 389 LNVD*EVAETPLLKHAHKIRRKSFFLIDRYFGDFS-TFVNITSF 261
+ VD EVA P K A +I F ++D Y D+S TF S+
Sbjct: 47 VEVDNEVAPVPSKKPASEIPTPQFVIVDTYERDYSPTFGQPASY 90
>At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 238
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 19 SVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMAN 198
++ G K H + K GG S+S++ E++ + + + RG D N+ IP+F M N
Sbjct: 162 ALGGHKRCHYE-GKNGGGVSSSVSNSEDVGSTSHVSSGH----RGFDLNIPPIPEFSMVN 216
Query: 199 G 201
G
Sbjct: 217 G 217
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,814,730
Number of Sequences: 28952
Number of extensions: 314096
Number of successful extensions: 821
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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