Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20015
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0218 + 16526082-16526375,16526606-16526725,16528078-165282...    29   3.9  
11_01_0128 - 1043053-1043151,1043238-1043570,1043588-1043707,104...    28   6.8  
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686...    28   6.8  
02_05_0780 - 31705605-31705754,31705858-31706191,31706306-317064...    28   6.8  

>02_03_0218 +
           16526082-16526375,16526606-16526725,16528078-16528238,
           16528601-16528634,16529296-16529398,16529784-16529963,
           16530726-16530742
          Length = 302

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = +3

Query: 273 RHLSGAISQVEGELGEEGSKTRT--GSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLD 446
           R  + A   +E   G+  S+ R    S Y   N    +GS + D     GR+F+      
Sbjct: 235 RERAFAPMNMENNFGQHDSRFRNRHDSNYAPRNMENKFGSNDSDFGTQSGRSFRHDPSFR 294

Query: 447 NAHSS 461
           N H S
Sbjct: 295 NQHGS 299


>11_01_0128 -
           1043053-1043151,1043238-1043570,1043588-1043707,
           1043810-1043993,1044088-1044275,1044714-1044808,
           1044884-1045003,1045232-1045350,1052717-1052799,
           1052892-1053071
          Length = 506

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/68 (30%), Positives = 27/68 (39%)
 Frame = +3

Query: 198 WILWCAKRKHGG*L*TCSQMDSLAQRHLSGAISQVEGELGEEGSKTRTGSVYTAANSAGF 377
           W L+C  R HG         DS     L+       G+LG    K  +  +Y AA +A F
Sbjct: 374 WTLYCVNRNHG----RIDVFDSNNYPALNTEYKDHHGDLGSRVVKRLSDRLYAAARTA-F 428

Query: 378 YGSGNYDL 401
              GN  L
Sbjct: 429 KRFGNQKL 436


>09_06_0235 -
           21763470-21764511,21767865-21768261,21768625-21768632,
           21769489-21769565
          Length = 507

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +3

Query: 282 SGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSS 461
           +G + Q  G  G  G     GS+ T++  AG +G G     +L   +   GT    + ++
Sbjct: 327 NGGVDQFNGGAGNGGQ----GSIVTSSGLAGNHGGGGGGFPSLYNSSEPAGTLPQMSATA 382

Query: 462 LLSNA 476
           LL  A
Sbjct: 383 LLQKA 387


>02_05_0780 -
           31705605-31705754,31705858-31706191,31706306-31706478,
           31706615-31706810,31707864-31708777
          Length = 588

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -1

Query: 370 AEFAAVYTLPVLVFDPSSPN--SPSTCEIAPLKCL*ASESICEHVHNYPPCFLFAHHKIQ 197
           AE  A+Y   ++V DP+ P   S     +A L  L  +   C       P +  AHH++ 
Sbjct: 242 AEAVALYDQAIMV-DPTRPAYWSNKAAALAALGRLIEAVGDCREAVRIDPSYGRAHHRLG 300

Query: 196 TCYLR 182
             YLR
Sbjct: 301 GLYLR 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,176,510
Number of Sequences: 37544
Number of extensions: 300501
Number of successful extensions: 698
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)