Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20013
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0623 + 4638952-4639024,4640422-4640439,4641312-4641660,464... 31 0.40
01_02_0106 - 11175200-11175385,11175463-11175496,11175987-111762... 30 1.2
11_04_0166 + 14317129-14317962,14318042-14318809,14319008-143197... 29 1.6
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100... 29 1.6
04_04_0359 + 24679907-24680146,24680511-24680939,24681111-246824... 29 2.8
03_06_0322 + 33114988-33115130,33116972-33117024,33117432-331177... 29 2.8
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 28 3.7
01_06_0856 - 32503824-32505014 28 4.9
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 27 8.6
>07_01_0623 +
4638952-4639024,4640422-4640439,4641312-4641660,
4643917-4643985,4645587-4645722,4646835-4646870
Length = 226
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -2
Query: 378 WWDQECSD-AIKKRKQVELQYCENCTSENFDLVTDAFKATS 259
W+ C IK K++E +C++CT+EN + ++ +AT+
Sbjct: 170 WFHPSCIGMTIKDAKKLEHFFCQSCTAENGKMAENSHEATA 210
>01_02_0106 -
11175200-11175385,11175463-11175496,11175987-11176247,
11176501-11176831,11176899-11177589,11177611-11178156,
11178441-11178680
Length = 762
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 447 FIEVADKT-FPLKNGALGFIPSPPWWDQECSDAIKKRKQVELQ 322
+ E+A K FP + G++G+ P W +E + KKR+ V ++
Sbjct: 150 YAELAKKNKFPHRLGSVGYAPKVEQWTKEEEEMRKKRQPVPME 192
>11_04_0166 +
14317129-14317962,14318042-14318809,14319008-14319740,
14353399-14353892,14353971-14354417,14354505-14355110,
14355204-14355391,14355470-14355640,14355723-14355810
Length = 1442
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 186 EGQTLGEIERQKDFQLSAFFFXNIN*WP 269
EG + + E+Q++F L A F IN WP
Sbjct: 305 EGVPVWDEEKQEEFNLRALLFVTINDWP 332
>06_03_1306 +
29208882-29209547,29209641-29209854,29209947-29210023,
29210132-29210171,29210254-29210323,29210419-29210488,
29210747-29210995,29212810-29214700,29215458-29215771
Length = 1196
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 501 PNISHGSESVCAEALTKLFIEVADKTFPLKN-GALGFIPSPPWWDQECS 358
PN+S S + T LF + +T P + G L F+P PP +Q+ S
Sbjct: 91 PNVSEPVYSNSSTFCTSLFSSSSMETEPCRQLGTLPFLPHPPKCEQQVS 139
>04_04_0359 +
24679907-24680146,24680511-24680939,24681111-24682402,
24682486-24682737,24682818-24682928,24683016-24683076,
24683178-24683270,24683348-24683533
Length = 887
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 447 FIEVADKT-FPLKNGALGFIPSPPWWDQECSDAIKKRKQVELQ 322
+ E+A K FP + G+ G+ P W +E + KKR+ V ++
Sbjct: 172 YAELAKKNKFPHRLGSAGYAPKVEQWTKEEEEMRKKRQLVPME 214
>03_06_0322 +
33114988-33115130,33116972-33117024,33117432-33117780,
33118450-33118518,33119015-33119150,33120048-33120080
Length = 260
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 378 WWDQECSD-AIKKRKQVELQYCENCTSEN 295
W+ C + IK+ K++E YC++C +EN
Sbjct: 205 WFHPSCVEITIKEAKKLEHFYCKSCIAEN 233
>02_05_0902 +
32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 441 EVADKTFPLKNGALGFIPSPPWWDQECSDAIKKRKQ 334
E A + P K L + PSPP D+E D K RK+
Sbjct: 93 EEAPRPAPAKYDLLPYSPSPPASDEERRDRRKDRKR 128
>01_06_0856 - 32503824-32505014
Length = 396
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 246 RKKQIAGNLFVSLFPLMSVLLWYGVILEDSGVHLLK 139
R +GN +L P +S+ LWY +E G LLK
Sbjct: 302 RPVSASGNSHRTLMPALSMRLWYAPHIELPGGQLLK 337
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 62 SFRNST-RGKSVQELII**SREKTRRSFSKCTPESSNITPYHRRT 193
+FR++T +G +E+ + E RRS KC + N+ Y++RT
Sbjct: 216 AFRDATLKGPLWEEVSRKLAEEGYRRSAKKCKEKFENVHKYYKRT 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,130,989
Number of Sequences: 37544
Number of extensions: 252361
Number of successful extensions: 662
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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