Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20013
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016420-8|AAB65305.1|  364|Caenorhabditis elegans Serpentine re...    30   0.83 
AF098504-1|AAC67412.1|  364|Caenorhabditis elegans Btb and math ...    29   1.9  
Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.      27   5.8  
AF144639-1|AAD44756.1|  552|Caenorhabditis elegans sphingosine-1...    27   5.8  
AF100673-6|AAC69001.1|  552|Caenorhabditis elegans Sphingosine p...    27   5.8  
AF067940-2|AAC19203.1|  219|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AF016420-8|AAB65305.1|  364|Caenorhabditis elegans Serpentine
           receptor, class r protein5 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 383 HLGGIKNVRMQLKKENKLSSNIVRIVHLKILIW 285
           HL  ++N+R+   K+NK   N ++  H+KI IW
Sbjct: 129 HLESLENIRLLRLKDNKNIDNCLK-SHIKIFIW 160


>AF098504-1|AAC67412.1|  364|Caenorhabditis elegans Btb and math
           domain containingprotein 25 protein.
          Length = 364

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = -2

Query: 378 WWDQE----CSDAIKKRKQVELQYCENCTSENFDLVTDAFKATSLYSXRKKQIAGNLFVS 211
           W D E      D+I+    VEL+Y E  +   FD     F    L + ++K     LF+S
Sbjct: 105 WEDMENQFLIDDSIRMECHVELKYIERTSYRKFDESAKEFSDVILVAEKQKFYVSKLFLS 164


>Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical
           protein F32H2.3 protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +2

Query: 392 IKPRAPFLSGNVLSATSINNLVSASAQ 472
           IKP +   SGNV+S+TS +N  +AS++
Sbjct: 341 IKPTSARHSGNVVSSTSNDNTTAASSK 367


>Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical
           protein ZC443.1 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 226 KSFCLSISPNVCPSVVWRNIRRFRCAFTETSSGFLPAS 113
           K+FC  ++P+V    +  +++R R  + +     +PAS
Sbjct: 81  KAFCHEVAPDVVEEALRNSLKRLRLDYVDLYLAHIPAS 118


>AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +2

Query: 392 IKPRAPFLSGNVLSATSINNLVSASAQ 472
           IKP +   SGNV+S+TS +N  +AS++
Sbjct: 341 IKPTSARHSGNVVSSTSNDNTTAASSK 367


>AF144639-1|AAD44756.1|  552|Caenorhabditis elegans
           sphingosine-1-phosphate lyase protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 430 QNISA*KWCSGLYSISTLVGSR 365
           Q  S   WC G+Y+  T+ GSR
Sbjct: 369 QYFSVADWCGGIYATPTIAGSR 390


>AF100673-6|AAC69001.1|  552|Caenorhabditis elegans Sphingosine
           phosphate lyase protein1 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 430 QNISA*KWCSGLYSISTLVGSR 365
           Q  S   WC G+Y+  T+ GSR
Sbjct: 369 QYFSVADWCGGIYATPTIAGSR 390


>AF067940-2|AAC19203.1|  219|Caenorhabditis elegans Hypothetical
           protein F36F12.4 protein.
          Length = 219

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -1

Query: 172 NIRR--FRCAFTETSSGFLPASLN-NQFLDRLAPSTVPERII 56
           N+RR  FR  F   ++GF P+SLN ++ +D   P    E ++
Sbjct: 16  NLRRAIFRIKFDYLATGFWPSSLNFSRSIDNRLPDNAWESVV 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,949
Number of Sequences: 27780
Number of extensions: 235969
Number of successful extensions: 608
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)