Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20012
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 155 4e-38
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 153 2e-37
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 152 3e-37
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 143 1e-34
03_02_0583 + 9635002-9637299 29 3.2
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 29 4.2
07_01_0894 - 7501918-7502535,7503568-7503604,7503781-7503951,750... 29 4.2
06_01_0928 - 7159857-7159922,7159923-7160024,7160126-7160206,716... 29 4.2
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 29 4.2
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 28 5.6
02_05_0755 - 31519765-31519896,31520073-31520135,31520236-315203... 28 5.6
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 28 7.4
12_02_1276 - 27487424-27488050,27488258-27489172 27 9.8
05_02_0004 - 5528713-5528718,5529039-5529390,5529802-5530339,553... 27 9.8
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 155 bits (375), Expect = 4e-38
Identities = 64/84 (76%), Positives = 78/84 (92%)
Frame = +2
Query: 257 DMVAQAIKGSGGFVWACKNYDGDVQSDIVAQGYGSLGMMTSVLMCPDGRTVESESAHGTV 436
DMVA A+K GG+VWACKNYDGDVQSD++AQG+GSLG+MTSVL+CPDGRT+E+E+AHGTV
Sbjct: 314 DMVAYALKSEGGYVWACKNYDGDVQSDLIAQGFGSLGLMTSVLVCPDGRTIEAEAAHGTV 373
Query: 437 TRHYRMHQQGKPTSTNPVASIYAW 508
TRHYR+HQ+G TSTN +ASI+AW
Sbjct: 374 TRHYRVHQKGGETSTNSIASIFAW 397
Score = 108 bits (260), Expect = 3e-24
Identities = 46/69 (66%), Positives = 59/69 (85%)
Frame = +3
Query: 30 GVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYK 209
GVA+ MYNTDESI +FA +S +A QK+WPLYLSTKNTILK+YDGRFKDIF+E +++ ++
Sbjct: 220 GVALSMYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQENYETKWR 279
Query: 210 TKFDEAKIW 236
KFD+A IW
Sbjct: 280 AKFDDAGIW 288
Score = 36.3 bits (80), Expect = 0.021
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 514 GLAHRAKLGRDSRIGALRS*PSKRRXVECIDSGKMTKDLVICIHG 648
GL HRAKL + R+ + V ++SGKMTKDL + +HG
Sbjct: 400 GLGHRAKLDDNKRLLDFVQ-KLEAACVGTVESGKMTKDLALLVHG 443
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 153 bits (370), Expect = 2e-37
Identities = 68/105 (64%), Positives = 83/105 (79%)
Frame = +2
Query: 257 DMVAQAIKGSGGFVWACKNYDGDVQSDIVAQGYGSLGMMTSVLMCPDGRTVESESAHGTV 436
DMVA A+K GG+VWACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDG+T+E+E+AHGTV
Sbjct: 253 DMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTV 312
Query: 437 TRHYRMHQQGKPTSTNPVASIYAWQEVLHTGPN*DGTPELERFAL 571
TRH+R+HQ+G TSTN +ASI+AW L D L FAL
Sbjct: 313 TRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNARLLDFAL 357
Score = 126 bits (303), Expect = 2e-29
Identities = 54/75 (72%), Positives = 66/75 (88%)
Frame = +3
Query: 30 GVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYK 209
GVA+ MYNTDESIR+FA +S A +KKWPLYLSTKNTILK+YDGRFKDIF+EV+++ +K
Sbjct: 177 GVALSMYNTDESIRAFAEASMTTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAGWK 236
Query: 210 TKFDEAKIWYEHRLI 254
+KF+ A IWYEHRLI
Sbjct: 237 SKFEAAGIWYEHRLI 251
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/46 (47%), Positives = 29/46 (63%)
Frame = +1
Query: 511 RGLAHRAKLGRDSRIGALRS*PSKRRXVECIDSGKMTKDLVICIHG 648
RGLAHRAKL ++R+ + V ++SGKMTKDL + IHG
Sbjct: 338 RGLAHRAKLDDNARLLDFAL-KLEAACVGTVESGKMTKDLALLIHG 382
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 152 bits (368), Expect = 3e-37
Identities = 63/84 (75%), Positives = 77/84 (91%)
Frame = +2
Query: 257 DMVAQAIKGSGGFVWACKNYDGDVQSDIVAQGYGSLGMMTSVLMCPDGRTVESESAHGTV 436
DMVA A+K GG+VWACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDG+T+E+E+AHGTV
Sbjct: 253 DMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTV 312
Query: 437 TRHYRMHQQGKPTSTNPVASIYAW 508
TRHYR+HQ+G TSTN +ASI+AW
Sbjct: 313 TRHYRVHQKGGETSTNSIASIFAW 336
Score = 126 bits (305), Expect = 1e-29
Identities = 55/75 (73%), Positives = 65/75 (86%)
Frame = +3
Query: 30 GVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYK 209
GVA MYNTDESIRSFA +S A +KKWPLYLSTKNTILK+YDGRFKDIF+EV+++ +K
Sbjct: 177 GVAQSMYNTDESIRSFAEASMATAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWK 236
Query: 210 TKFDEAKIWYEHRLI 254
+KF+ A IWYEHRLI
Sbjct: 237 SKFEAAGIWYEHRLI 251
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +1
Query: 511 RGLAHRAKLGRDSRIGALRS*PSKRRXVECIDSGKMTKDLVICIHG 648
RGLAHRAKL ++R+ + + ++SGKMTKDL + +HG
Sbjct: 338 RGLAHRAKLDDNARLLDFTQ-KLEAACIGAVESGKMTKDLALLVHG 382
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 143 bits (346), Expect = 1e-34
Identities = 59/84 (70%), Positives = 76/84 (90%)
Frame = +2
Query: 257 DMVAQAIKGSGGFVWACKNYDGDVQSDIVAQGYGSLGMMTSVLMCPDGRTVESESAHGTV 436
DMVA A+K GG+VWACKNYDGDVQSD +AQG+GSLG+M+SVL+ DG+T+E+E+AHGTV
Sbjct: 287 DMVAYAVKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMSSVLLSSDGKTLEAEAAHGTV 346
Query: 437 TRHYRMHQQGKPTSTNPVASIYAW 508
TRH+R+HQ+G+ TSTN +ASI+AW
Sbjct: 347 TRHFRLHQKGQETSTNSIASIFAW 370
Score = 136 bits (329), Expect = 1e-32
Identities = 59/82 (71%), Positives = 70/82 (85%)
Frame = +3
Query: 9 LYDFKTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEE 188
+Y+FK PGVA+ MYN DESIR+FA SS +AL KKWPLYLSTKNTILK+YDGRFKDIF+E
Sbjct: 204 VYNFKGPGVALSMYNVDESIRAFAESSMAMALSKKWPLYLSTKNTILKKYDGRFKDIFQE 263
Query: 189 VFQSDYKTKFDEAKIWYEHRLI 254
V++ +K KF+E IWYEHRLI
Sbjct: 264 VYEEKWKEKFEENSIWYEHRLI 285
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = +1
Query: 511 RGLAHRAKLGRDSRIGALRS*PSKRRXVECIDSGKMTKDLVICIHG 648
RGL HRAKL ++ R+ + +E ++SGKMTKDL + IHG
Sbjct: 372 RGLEHRAKLDKNDRLLDFTK-KLESACIETVESGKMTKDLALLIHG 416
>03_02_0583 + 9635002-9637299
Length = 765
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -1
Query: 517 DLLPGVDRSDRVSGCRLALLVHTVVTCHRP 428
DLLPG RSDR S L H V+ H P
Sbjct: 24 DLLPGHQRSDRRSASSTNLDQHVVLGSHSP 53
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 389 TSILMSSFPMTRNPEQQYRTAHLRRSFCRPK 297
+S+++S P + P YR+A R F RP+
Sbjct: 2008 SSLIVSKVPGEKGPRTNYRSASSRAGFVRPR 2038
>07_01_0894 -
7501918-7502535,7503568-7503604,7503781-7503951,
7504396-7504631,7504796-7504867,7504963-7505097,
7505544-7505549
Length = 424
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 350 GYGSLGMMTSVLMCPDGRTVESESAHGTV 436
G S+G T +LM P G +++ES G V
Sbjct: 363 GVASVGAQTGILMGPSGVGIDAESTKGAV 391
>06_01_0928 -
7159857-7159922,7159923-7160024,7160126-7160206,
7160289-7160384,7160462-7160566,7160648-7160722,
7161372-7161431,7161960-7162090,7162175-7162250,
7163390-7163459,7163603-7163664,7163788-7163871,
7163973-7164047,7164448-7164585,7164733-7164791,
7164910-7165123,7167996-7168091,7168701-7169639
Length = 842
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 313 LRRRCAVRYCCSGLRVIGNDDISIDVSRWPYRGIRIGARDGDTSLPYAP 459
L C C+ L + D+ + ++ PY +R+G +DG +S P AP
Sbjct: 108 LEVECPGVVSCADLLAVAARDL-VTMTGGPYYPLRLGRKDGLSSSPSAP 155
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 482 NPVASIYAWQEVLHTGPN*DGTPELERFALSPRRG 586
+P+ S + WQ LH+ P DGT L+ FA + +G
Sbjct: 1095 SPIFSRHNWQLPLHSLPIQDGTNRLQVFACALLKG 1129
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 28.3 bits (60), Expect = 5.6
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Frame = +2
Query: 311 NYDGDVQSDIVAQGYGSLGMMTSVLMCPDGRTVESESAHGTVTRHYRMHQQGK-PTSTNP 487
N DG+VQ +A YG G+ + M G G HY ++ K P
Sbjct: 103 NDDGEVQVFSLADAYGGDGLFSGARMEDSGCIAGGYEVDGRTVDHYLVYVSTKEPVRERR 162
Query: 488 VASIYAWQEVLHTGPN*DGTPELERFALSP 577
A++ L TG TP F +SP
Sbjct: 163 SPWNVAYKTNLRTGETERLTPP-GTFDISP 191
>02_05_0755 -
31519765-31519896,31520073-31520135,31520236-31520352,
31520553-31520642,31520897-31520984,31521462-31521531,
31521945-31522023,31523231-31523275,31523927-31524013,
31524101-31524184,31524304-31524483,31524562-31524702,
31524873-31524981,31525411-31525466,31525877-31525924,
31526021-31526159,31526710-31526817,31527138-31527164,
31527325-31527417,31527837-31527916,31528051-31528140,
31528286-31528376,31528503-31528591,31528756-31528794,
31530611-31530733
Length = 755
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -1
Query: 574 AKSEALQFWSPVLIWPGVQDLLPGVDRSDRVSGCRLALLVHTVVTCHRPVRRF 416
AK LQ S + PGVQDLL V + D + G LV T V+++
Sbjct: 542 AKEAVLQTVSVIFEDPGVQDLLVKVYQKDWMEGMVTEYLVATFADYFGDVKQY 594
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 245 SFNYDMVAQAIKGSGGFVWACKNYDGDVQSDIVAQGYGSLGMM 373
SF D++ +G FVW D++ + GYG M+
Sbjct: 316 SFLPDILDSKAEGRNNFVWTAAGKQADLEKQVGVGGYGYPAMV 358
>12_02_1276 - 27487424-27488050,27488258-27489172
Length = 513
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 243 HRLITTWWHRLLRDQVALFGP 305
HRL+ T HR+LRD + GP
Sbjct: 60 HRLVNTLAHRVLRDLADVHGP 80
>05_02_0004 -
5528713-5528718,5529039-5529390,5529802-5530339,
5530354-5531731,5531895-5532015,5534226-5534545
Length = 904
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 350 GYGSLGMMTSVLMCPDGRTVESESAHGTV 436
G S+G T +LM P G +++ES G V
Sbjct: 846 GVVSVGAQTGILMGPSGVGIDAESTKGAV 874
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,573,327
Number of Sequences: 37544
Number of extensions: 438456
Number of successful extensions: 1108
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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