Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20012
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37) 153 9e-38
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 121 6e-28
SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08) 31 0.62
SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13) 30 1.4
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_51024| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-08) 29 4.3
SB_9471| Best HMM Match : VQ (HMM E-Value=6.2) 28 5.7
SB_57353| Best HMM Match : TIP49 (HMM E-Value=0) 28 7.6
>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
Length = 296
Score = 153 bits (372), Expect = 9e-38
Identities = 68/79 (86%), Positives = 74/79 (93%)
Frame = +2
Query: 257 DMVAQAIKGSGGFVWACKNYDGDVQSDIVAQGYGSLGMMTSVLMCPDGRTVESESAHGTV 436
DMVA A+K GGF+WACKNYDGDVQSD VAQG+GSLGMMTSVL+CPDG+TVESE+AHGTV
Sbjct: 194 DMVAFALKTEGGFIWACKNYDGDVQSDSVAQGFGSLGMMTSVLVCPDGKTVESEAAHGTV 253
Query: 437 TRHYRMHQQGKPTSTNPVA 493
TRHYRMHQQGK TSTNPVA
Sbjct: 254 TRHYRMHQQGKETSTNPVA 272
Score = 68.5 bits (160), Expect = 4e-12
Identities = 38/75 (50%), Positives = 46/75 (61%)
Frame = +3
Query: 30 GVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYK 209
GV MGM+NTD SIR+FAHSSFQ AL KK+PLY+ +YK
Sbjct: 141 GVTMGMFNTDVSIRAFAHSSFQYALDKKYPLYM-----------------------REYK 177
Query: 210 TKFDEAKIWYEHRLI 254
+KF+E+ IWYEHRLI
Sbjct: 178 SKFEESNIWYEHRLI 192
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 121 bits (291), Expect = 6e-28
Identities = 60/103 (58%), Positives = 71/103 (68%)
Frame = +2
Query: 257 DMVAQAIKGSGGFVWACKNYDGDVQSDIVAQGYGSLGMMTSVLMCPDGRTVESESAHGTV 436
DMVA A+K GGFVWA KNYDGDVQSD +AQ DG+T+ESE+AHGTV
Sbjct: 242 DMVAYALKSEGGFVWAAKNYDGDVQSDTLAQ---------------DGKTIESEAAHGTV 286
Query: 437 TRHYRMHQQGKPTSTNPVASIYAWQEVLHTGPN*DGTPELERF 565
TRHYR HQ+G TSTNP+ASI+AW + L DG PEL++F
Sbjct: 287 TRHYREHQKGNETSTNPIASIFAWTQGLSHRAKLDGNPELKKF 329
Score = 120 bits (290), Expect = 8e-28
Identities = 51/77 (66%), Positives = 65/77 (84%)
Frame = +3
Query: 24 TPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSD 203
T GV MGMYNTDE+IR FAHS Q A+ K+ PLY+STKNTILK+YDGRFKDIF+++++ +
Sbjct: 164 TGGVMMGMYNTDEAIRDFAHSCMQYAIHKQVPLYMSTKNTILKKYDGRFKDIFQDIYERE 223
Query: 204 YKTKFDEAKIWYEHRLI 254
Y+++F E IWYEHRLI
Sbjct: 224 YESQFKELGIWYEHRLI 240
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +1
Query: 511 RGLAHRAKLGRDSRIGALRS*PSKRRXVECIDSGKMTKDLVICIHGL 651
+GL+HRAKL + + ++ V+ +D GKMTKDL CI+GL
Sbjct: 312 QGLSHRAKLDGNPELKKFCK-ALEKACVDTVDQGKMTKDLAACIYGL 357
>SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)
Length = 1057
Score = 31.5 bits (68), Expect = 0.62
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +2
Query: 350 GYGSLGMMTSVLMCPDGRTVESESAHGTVT-RHYRMHQQGKPTSTNPVASIYAWQEVLHT 526
G+G+L T + C D T +S HGTVT R H+ G T T + Y +
Sbjct: 44 GHGTL--TTRLRSCHDTITAQSHHNHGTVTPRSRHTHRDGHGTLTTRLR--YCHDTITAQ 99
Query: 527 GPN*DGTPELERFALSPRRGVXSSASIAVK*Q 622
+ GT R SPRR + +IAV+ Q
Sbjct: 100 SHHNHGT-VTPRSRHSPRRSRYTHDAIAVQSQ 130
>SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13)
Length = 302
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 93 QVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIW 236
Q+ L+ K L K TI + G + ++S YKT+ E ++W
Sbjct: 167 QLLLEPKQGLVKGQKFTIKLEFSGELSNKMAGFYKSSYKTRNGEVRVW 214
>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 756
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 295 CLGLQKLRRRCAVRYCCSGLRVIGNDDISIDVSRWPYR 408
C G K R+C + C + RV+ D++ D++R Y+
Sbjct: 127 CWGDSKKTRKCGIAPCPANKRVVNFLDVTFDLNRNTYQ 164
>SB_51024| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-08)
Length = 342
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 387 CVPMAVPWNPNRRTGR 434
CVP+A+PW P+R + R
Sbjct: 296 CVPVALPWRPSRPSSR 311
>SB_9471| Best HMM Match : VQ (HMM E-Value=6.2)
Length = 307
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 362 LGMMTSVLMCPDGRTVESESAHGTVTR-HYRMHQQGKPTSTN 484
L ++ CPDGR SE + GTV++ H H T N
Sbjct: 255 LDQAEAITACPDGRLFYSEKSSGTVSQVHAEGHDSVVLTGLN 296
>SB_57353| Best HMM Match : TIP49 (HMM E-Value=0)
Length = 283
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 344 AQGYGSLGMMTSVLMCPDGRTVESESAHGTVTRH 445
A+ Y ++G T + CP+G + + TVT H
Sbjct: 23 ARDYDAMGPQTKFVQCPEGELQKRKEVVHTVTLH 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,631,074
Number of Sequences: 59808
Number of extensions: 511411
Number of successful extensions: 1340
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -