Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20012
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical pr... 168 3e-42
Z68343-3|CAA92778.1| 412|Caenorhabditis elegans Hypothetical pr... 167 5e-42
Z81050-9|CAB02858.2| 400|Caenorhabditis elegans Hypothetical pr... 32 0.31
Z19153-1|CAA79546.1| 374|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z72513-1|CAA96669.1| 260|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical
protein C34F6.8 protein.
Length = 435
Score = 168 bits (409), Expect = 3e-42
Identities = 75/106 (70%), Positives = 88/106 (83%)
Frame = +2
Query: 257 DMVAQAIKGSGGFVWACKNYDGDVQSDIVAQGYGSLGMMTSVLMCPDGRTVESESAHGTV 436
D VAQA+K SGGFVWACKNYDGDVQSDIVAQGYGSLG+M+SVLMCPDG+T+E+E+AHGTV
Sbjct: 275 DQVAQALKSSGGFVWACKNYDGDVQSDIVAQGYGSLGLMSSVLMCPDGKTIEAEAAHGTV 334
Query: 437 TRHYRMHQQGKPTSTNPVASIYAWQEVLHTGPN*DGTPELERFALS 574
TRHYR HQ+G TSTNP+ASI+AW LH D L+ F+L+
Sbjct: 335 TRHYREHQKGNSTSTNPIASIFAWTRGLHHRGVLDNNEALKTFSLT 380
Score = 129 bits (312), Expect = 1e-30
Identities = 56/83 (67%), Positives = 68/83 (81%), Gaps = 1/83 (1%)
Frame = +3
Query: 9 LYDFK-TPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFE 185
+YDFK + GV + MYNTDESI+ FAHS FQ AL K+WPLYLSTKNTILK+YDGRFKDIF+
Sbjct: 191 VYDFKKSGGVGLAMYNTDESIKGFAHSCFQYALMKQWPLYLSTKNTILKKYDGRFKDIFQ 250
Query: 186 EVFQSDYKTKFDEAKIWYEHRLI 254
++++ Y+ F KIWYEHRLI
Sbjct: 251 DIYEKKYEADFKNNKIWYEHRLI 273
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +1
Query: 511 RGLAHRAKLGRDSRIGALRS*PSKRRXVECIDSGKMTKDLVICIHG 648
RGL HR L + + S ++ ++ ++ GKMTKDL ICIHG
Sbjct: 360 RGLHHRGVLDNNEALKTF-SLTLEKACIDTVEEGKMTKDLSICIHG 404
>Z68343-3|CAA92778.1| 412|Caenorhabditis elegans Hypothetical
protein F59B8.2 protein.
Length = 412
Score = 167 bits (407), Expect = 5e-42
Identities = 76/104 (73%), Positives = 86/104 (82%)
Frame = +2
Query: 257 DMVAQAIKGSGGFVWACKNYDGDVQSDIVAQGYGSLGMMTSVLMCPDGRTVESESAHGTV 436
DMVAQA+K GGFVWACKNYDGDVQSD VAQGYGSLG+MTSVL+CPDG+TVE+E+AHGTV
Sbjct: 252 DMVAQAMKSDGGFVWACKNYDGDVQSDSVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTV 311
Query: 437 TRHYRMHQQGKPTSTNPVASIYAWQEVLHTGPN*DGTPELERFA 568
TRHYRMHQ+G+ TSTNP+ASI+AW L D LE FA
Sbjct: 312 TRHYRMHQKGQETSTNPIASIFAWSRGLAHRATLDKNSALETFA 355
Score = 128 bits (309), Expect = 3e-30
Identities = 56/82 (68%), Positives = 71/82 (86%)
Frame = +3
Query: 9 LYDFKTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEE 188
++DFK PGV++ MYNTD+SIR FAH+SF+ ALQ+K+PLYLSTKNTILK+YDGRFKDIF E
Sbjct: 170 VFDFKGPGVSLSMYNTDDSIRDFAHASFKYALQRKFPLYLSTKNTILKKYDGRFKDIFAE 229
Query: 189 VFQSDYKTKFDEAKIWYEHRLI 254
++ +Y+ +F A IWYEHRLI
Sbjct: 230 IY-PEYEAEFKAAGIWYEHRLI 250
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +1
Query: 508 ARGLAHRAKLGRDSRIGALRS*PSKRRXVECIDSGKMTKDLVICIHG 648
+RGLAHRA L ++S + + + +E +++G +TKDL IC+ G
Sbjct: 336 SRGLAHRATLDKNSALETFAN-NLEAVCIETMEAGFLTKDLAICVKG 381
>Z81050-9|CAB02858.2| 400|Caenorhabditis elegans Hypothetical
protein C50B6.11 protein.
Length = 400
Score = 32.3 bits (70), Expect = 0.31
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 54 TDESIRSFAH---SSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDE 224
TD S+R F H + L ++ L T NT + +F +I+E FQ+ + T FD
Sbjct: 127 TDPSLR-FPHLGACKANLTLDQQTLTKLWTPNTCF--VNSKFAEIYESSFQNVFLTLFDN 183
Query: 225 AKIWYEHRL 251
+W +R+
Sbjct: 184 GTVWVNYRV 192
>Z19153-1|CAA79546.1| 374|Caenorhabditis elegans Hypothetical
protein C38C10.1 protein.
Length = 374
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +3
Query: 177 IFEEVFQSDYKTKFDEAKIWYEHRLITTWWHRLLRDQVALFGPAKTTTEMCSPILL 344
+F F F+ W + L WW+ L + FG A TT +CS + L
Sbjct: 50 LFNMAFADLLIALFNVGTSW-TYNLYYDWWYGDLCTLTSFFGIAPTTVSVCSMMAL 104
>Z72513-1|CAA96669.1| 260|Caenorhabditis elegans Hypothetical
protein T04F3.2 protein.
Length = 260
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/55 (25%), Positives = 19/55 (34%)
Frame = -2
Query: 615 FTAIDALDXTPLRGLRAKRSNSGVPS*FGPVCKTSCQA*IEATGLVDVGLPCWCI 451
F + LD R KR G + P C + DV + CWC+
Sbjct: 45 FEEVIRLDCASQRRKALKRKTDGDARIYIPTCSPKNSLLYDKVQCYDVSIYCWCV 99
>Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical
protein R06C7.8 protein.
Length = 987
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 165 RFKDIFEEVFQSDYKTKFDEAKIWYEHRLITTWWHRLLRDQV 290
++KD F E DY+ + D ++ +H++I T R R++V
Sbjct: 228 KWKDTFGEDVDDDYRKRKDSGVVFVKHQVIDT--DRQAREEV 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,654
Number of Sequences: 27780
Number of extensions: 362212
Number of successful extensions: 873
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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