Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20012
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              24   1.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   5.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.8  

>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 9   LYDFKTPGVAMGMYNTDESIRSFAH 83
           L  +   G+  G Y+ DE +++F H
Sbjct: 87  LSTYNIAGIIEGQYHDDEDLKTFFH 111


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 123 IEAIFSVKLPENWNGQRTESIRRYCTC 43
           + A+ + K+PEN+N  +      Y TC
Sbjct: 690 VYAVKTRKIPENFNESKFIGFTMYTTC 716


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 123 IEAIFSVKLPENWNGQRTESIRRYCTC 43
           + A+ + K+PEN+N  +      Y TC
Sbjct: 780 VYAVKTRKIPENFNESKFIGFTMYTTC 806



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 507 GKRSCTPGQIRTGLQNWSASLLALEE 584
           G  SC P     G+Q   A L A+++
Sbjct: 69  GGASCGPNVYNRGVQRLEAMLFAVDQ 94


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 434 VTRHYRMHQQGKP 472
           +TRHYR H   KP
Sbjct: 107 LTRHYRTHTGEKP 119


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/23 (26%), Positives = 12/23 (52%)
 Frame = +3

Query: 234 WYEHRLITTWWHRLLRDQVALFG 302
           WY++  +   WH +L   + + G
Sbjct: 41  WYQYPPLNPMWHGILGFVIGMLG 63


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/23 (26%), Positives = 12/23 (52%)
 Frame = +3

Query: 234 WYEHRLITTWWHRLLRDQVALFG 302
           WY++  +   WH +L   + + G
Sbjct: 7   WYQYPPLNPMWHGILGFVIGMLG 29


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 113 FFL*SYLKTGMGKGP 69
           +F+    KTG+GKGP
Sbjct: 555 YFIFDAEKTGLGKGP 569


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 446  SDVSPSRAPIRIPRYGHRDTSILMSSFP 363
            SD+SP      +PR G    S L +  P
Sbjct: 1827 SDISPMSEQKSLPRRGRSSRSSLRTLLP 1854


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 446  SDVSPSRAPIRIPRYGHRDTSILMSSFP 363
            SD+SP      +PR G    S L +  P
Sbjct: 1823 SDISPMSEQKSLPRRGRSSRSSLRTLLP 1850


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 123 IEAIFSVKLPENWNGQRTESIRRYCTC 43
           + A+ + K+PE +N  +      Y TC
Sbjct: 832 VYAVLTRKIPEAFNESKHIGFTMYTTC 858


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,988
Number of Sequences: 438
Number of extensions: 4770
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)