Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20010
(420 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 56 1e-08
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108... 55 2e-08
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 51 3e-07
04_01_0039 + 455760-457631 29 1.5
08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084 28 3.5
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888... 28 3.5
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 27 6.1
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 56.0 bits (129), Expect = 1e-08
Identities = 31/76 (40%), Positives = 44/76 (57%)
Frame = +3
Query: 30 MAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEK 209
MAQII G VA I ++ V L S + P LA+V VG R+DS Y++MK KA +
Sbjct: 1 MAQIIDGKAVAADIRREVAADVAALSSAHN-LVPGLAVVIVGSRKDSQTYVQMKRKACAE 59
Query: 210 IGIAAEHIRLPRDITK 257
+GI + + L DI++
Sbjct: 60 VGIRSVDVDLAEDISE 75
Score = 47.2 bits (107), Expect = 5e-06
Identities = 21/51 (41%), Positives = 35/51 (68%)
Frame = +2
Query: 263 LLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 415
L+A++ LN P+VHGI+VQ+PL I+ ++ + +S +KDVDG + +N
Sbjct: 78 LVAEVHRLNADPAVHGILVQLPLPKH--INEEKILNEISLEKDVDGFHPLN 126
>02_01_0156 -
1086750-1086920,1087680-1087847,1087935-1088171,
1088763-1089073,1089343-1089571
Length = 371
Score = 55.2 bits (127), Expect = 2e-08
Identities = 27/72 (37%), Positives = 42/72 (58%)
Frame = +3
Query: 33 AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKI 212
A+II G VA I ++ ++ +++ G P LA++ VG R+DS Y+R K KA E +
Sbjct: 80 AKIIDGKLVAKQIREEIAVEIAKMKDA-IGVVPGLAVILVGSRKDSQTYVRNKKKACEAV 138
Query: 213 GIAAEHIRLPRD 248
GI + + LP D
Sbjct: 139 GIKSYEVNLPED 150
Score = 51.2 bits (117), Expect = 3e-07
Identities = 24/52 (46%), Positives = 35/52 (67%)
Frame = +2
Query: 260 ELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 415
E+L I + N PSVHGI+VQ+PL H ++ + +AVS +KDVDG + +N
Sbjct: 155 EVLKHIATFNSDPSVHGILVQLPL--PHHMNDENILNAVSIEKDVDGFHPLN 204
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 51.2 bits (117), Expect = 3e-07
Identities = 28/75 (37%), Positives = 43/75 (57%)
Frame = +3
Query: 33 AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKI 212
A II G VA I + ++V ++++ G P LA+V VG R DS Y+R K+K E++
Sbjct: 98 ATIIDGKSVAEDIRFQIAEEVRQMKNA-VGHVPGLAVVLVGDRRDSESYVRYKIKGCEEV 156
Query: 213 GIAAEHIRLPRDITK 257
GI + LP + T+
Sbjct: 157 GIKSLLAELPGNCTE 171
Score = 50.0 bits (114), Expect = 8e-07
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +2
Query: 275 ITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 415
++ NE PSVHGI+VQ+PL +D R+ A+S +KDVDG + +N
Sbjct: 178 VSRFNEDPSVHGILVQLPLPQH--MDEERILSAISLEKDVDGFHPLN 222
>04_01_0039 + 455760-457631
Length = 623
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 275 ITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVS 379
++ LNE P+++G +V + DSD ++ + DAV+
Sbjct: 469 VSRLNEKPTINGTLVDITCDSDGKVEKF-IRDAVT 502
>08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084
Length = 380
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 125 EARPF*TQPRHLLTQVIFYRS 63
EAR F QP+H LT ++ +RS
Sbjct: 338 EARSFEPQPKHRLTNLVIFRS 358
>06_01_1084 +
8883301-8883515,8883736-8884063,8884764-8885022,
8885581-8885681
Length = 300
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 69 IENDLRQQVT--RLRSKWSGFEPRLAIVQVGG 158
I+NDL Q++T R+ S+W G + A VGG
Sbjct: 160 IDNDLAQRLTGTRMESRWRGRRSKGASTGVGG 191
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 27.1 bits (57), Expect = 6.1
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 185 PDVDVGVLAPAXLHDGKPGLEARPF*TQPRHLLTQVIFYRSCNFNP-RYNLCH 30
PD G A + KPG + + QPRH +F SC NP + N+ H
Sbjct: 272 PDSRTGCNAHLVIRRKKPGAKLEVYAFQPRH--NHPLFATSCMPNPLQPNVVH 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,190,717
Number of Sequences: 37544
Number of extensions: 181393
Number of successful extensions: 421
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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