Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20010
         (420 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21968| Best HMM Match : THF_DHG_CYH (HMM E-Value=0.0018)            56   1e-08
SB_24382| Best HMM Match : F5_F8_type_C (HMM E-Value=4.90006e-41)      32   0.17 
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)                  28   2.7  
SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)                      28   3.6  
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)        28   3.6  
SB_2592| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.6  
SB_57561| Best HMM Match : fn3 (HMM E-Value=0)                         27   6.3  

>SB_21968| Best HMM Match : THF_DHG_CYH (HMM E-Value=0.0018)
          Length = 101

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 25/53 (47%), Positives = 38/53 (71%)
 Frame = +2

Query: 257 IELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 415
           +++L  +  LN+  ++HGIIVQ+P DS++ ID    T+AV P+KDVDGL+  N
Sbjct: 20  MQVLKAVDELNKDSAIHGIIVQLPPDSENPIDPGICTNAVIPEKDVDGLHDEN 72


>SB_24382| Best HMM Match : F5_F8_type_C (HMM E-Value=4.90006e-41)
          Length = 316

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 134 PGLEARPF*TQPRHLLTQVIFYRSCNFNPRYNLCHLSPENCLV 6
           P L  RPF T+ R + +Q +F R    + RY  C L   +CL+
Sbjct: 21  PPLFTRPFFTRIRTIYSQPVFIRRTLMDNRYRSCLLKGFSCLI 63


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 81  LRQQVTRLRSKWSGFEPRLAIVQVGGREDS 170
           +RQ V  + SK+ G  PR AI Q+GG  D+
Sbjct: 597 VRQPVNDVTSKYPG-SPRNAIAQIGGSRDA 625


>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
          Length = 885

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +3

Query: 81  LRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEHIRLPRDI 251
           LR+ V  +RS    + P  A +     EDSN+Y     +  + + +  +H+    D+
Sbjct: 302 LRKLVMEMRSNTIAWNPIEAYMFTAANEDSNLYTYDMRRLDQAVNVHMDHVSAVLDV 358


>SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)
          Length = 842

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 27  KMAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQ 149
           K A + +G  +AG I++ + +QVTR +   +GF   L + Q
Sbjct: 2   KKAAVAAGASIAGHIKHAIAEQVTRAK---TGFPRSLTLAQ 39


>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
          Length = 1183

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
 Frame = +3

Query: 78  DLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNV--YIRMKLKAAEKI--GIAAEHIRLPR 245
           DL  QVT LRS+    E  +++++   R D N   ++R +    EK    + +E  ++  
Sbjct: 441 DLDVQVTNLRSQKIRLEAEISVMKEERRRDDNEVDHLRKEKSDLEKAMHSLRSEKTKVET 500

Query: 246 DITK*SC*QKSRV*TNLLPFTASLFKCXLIRTTRSTLIE 362
           DIT      + R  T+ L F A   +  L R  RS  +E
Sbjct: 501 DITMAEDTWRKRNDTSELRFEADDLEKEL-RDLRSERVE 538


>SB_2592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 125 EARPF*TQPRHLLTQV---IFYRSCNFNPRYNLCHL 27
           +ARP    P  L T+    + Y +C+ +P +NLC L
Sbjct: 123 DARPLLLHPNKLFTKRRGRVSYYNCSTSPSFNLCEL 158


>SB_57561| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1614

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 208 KLVSPPNISAYQGTSLNRAVSKNHESE 288
           K++ PPN+ AY  +S + AVS  H  E
Sbjct: 762 KILPPPNVIAYNTSSTSIAVSWQHIPE 788


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,597,280
Number of Sequences: 59808
Number of extensions: 199571
Number of successful extensions: 427
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)