Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20010
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging ...    69   1e-12
Z50741-1|CAA90609.1|  395|Caenorhabditis elegans Hypothetical pr...    30   0.58 
AF039049-11|AAB94246.1|  499|Caenorhabditis elegans Cytochrome p...    30   0.58 
U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate fi...    28   2.4  

>U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging
           adult overexpressionprotein 3 protein.
          Length = 303

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 34/76 (44%), Positives = 50/76 (65%)
 Frame = +3

Query: 30  MAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEK 209
           +A+I+SG+E +  + +D+ Q++ + R     F   LAIVQVG R DSNVYI  KLK A++
Sbjct: 2   VAEIVSGLEYSKKVLHDVGQKIAKTREHHPNFHAVLAIVQVGNRSDSNVYINSKLKKAKE 61

Query: 210 IGIAAEHIRLPRDITK 257
           IG   + I+LP  IT+
Sbjct: 62  IGADGKLIKLPDTITQ 77



 Score = 56.4 bits (130), Expect = 8e-09
 Identities = 26/52 (50%), Positives = 33/52 (63%)
 Frame = +2

Query: 260 ELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 415
           +L  +I +LN    + GII+Q+PLD  H IDA  V D + P KDVDGL  IN
Sbjct: 79  DLKREIMALNHDNEIDGIIIQLPLDCKHEIDADSVIDLIDPLKDVDGLTRIN 130


>Z50741-1|CAA90609.1|  395|Caenorhabditis elegans Hypothetical
           protein F55G7.1 protein.
          Length = 395

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 134 PGLEARPF*TQPRHLLTQVIFYRSCNFNPRYNLCH 30
           P     PF +QP+H+     F++S N N  ++LC+
Sbjct: 57  PNFRRVPFSSQPQHVSNAQSFHQSPNSNDSFSLCY 91


>AF039049-11|AAB94246.1|  499|Caenorhabditis elegans Cytochrome p450
           family protein 35B2 protein.
          Length = 499

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -3

Query: 394 NIFIRRDSISDSMSVDRVVRIKXHLNNDAVNGRRFVQTRDF 272
           NI + RDS+ + +  +   R +  ++ DAVNG+  VQT DF
Sbjct: 134 NIGVGRDSMEERILEELDARCE-EIDADAVNGKTVVQTSDF 173


>U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate
           filament, d protein 2 protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 27  KMAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLA 140
           K+ +I  G E   SI+N  R+++ R+RS  + F  +L+
Sbjct: 288 KITEIKKGSESYSSIQNQAREEILRIRSIVNEFRGKLS 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,501,534
Number of Sequences: 27780
Number of extensions: 148859
Number of successful extensions: 349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)