Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20009X
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    31   0.091
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   0.85 
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   1.5  
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    26   2.0  
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   2.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    25   4.5  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   6.0  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   6.0  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   6.0  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    25   6.0  
SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    24   7.9  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    24   7.9  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    24   7.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   7.9  

>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 30.7 bits (66), Expect = 0.091
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 339 GEDKSELNWETMPGRCPWSPGAKVDRRTHAVHLVVSYQFVHDI 211
           G D+ E N +  P + PW PG K++     V     Y+ +H+I
Sbjct: 59  GMDEEEQN-DAQPSKIPWLPGGKINADEKLVADPSVYEMLHNI 100


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 118 QLYNSVVVADYDSAVEKSKHLYEEKKS 198
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 308 VSQLSSDLSSPKTRLSLCTSATV 376
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
 Frame = -1

Query: 357 KLNRVFGEDKSELNWETMPG-RCPWSPGA-----KVDRRTHAVHLVVSYQFVHDICD 205
           KL  VF E    + +  +PG  CP +  A     +V RR   +  VV +QF+  +CD
Sbjct: 73  KLTEVFNEAHENVKY--LPGIECPPNVIAVPDVREVARRADILVFVVPHQFIERVCD 127


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +1

Query: 136 VVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMSTPINFGSRAPRTSS 300
           V A+ + AV   KH+       V   VVN+  +  K N +  P +F      T S
Sbjct: 27  VTAEDEKAVTNKKHINSSATVHVFHGVVNRTFK-TKGNTVGLPKSFSKAVIETLS 80


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 178 LYEEKKSEVITNVVNKLIRNNKMNCMSTPINFGS 279
           ++E+K S    + VN+ I N+     S P+ FG+
Sbjct: 567 IHEKKLSHAFLDAVNRKILNSSDAITSIPLAFGA 600


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 118 QLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN---KLIRNNKMNCMSTPINFGS 279
           QLY  + +  +    +    L E  K +V+TN +    K ++N+K N  +  +N G+
Sbjct: 11  QLYRFIAMDQWSDNKDAIGMLSESLKEKVVTNEIAPALKEVKNHKYNFETEILNTGN 67


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +3

Query: 219 EQTDTKQQDELHEYAYQLWLQGSKDIVRALFPS*VQTYLRRKRD*AYVQARRSRFDAEK 395
           EQ D+K Q+E+ +Y   L     KD V  L      +Y++ ++  A   ++   FDA+K
Sbjct: 286 EQMDSKDQEEIQDYLNSLLSVHEKDGV--LLQKFHNSYVQYQK-LAVALSKYENFDADK 341


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 109  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMSTPINFGS 279
            LEE   +  V+   + A+  SK +  ++  E+I +  NK I +N    +    N G+
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSNGEGFLIEKDNIGT 1679


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 153 VVIGDDDAIVKLLLQNVVRDVGICSIQ 73
           VVIGD+  I K +L N V+    CSI+
Sbjct: 371 VVIGDNCRIGKAILANSVKIGNNCSIE 397


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 339 GEDKSELNWETMPGRCPW 286
           G+D     WE M GRC W
Sbjct: 398 GDDGVLRIWEVMTGRCVW 415


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 109 LEEQLYNSVVVADYDSAVEKSKHLYEE-KKSEVITNVVNKLIRNNKMN 249
           LE  L +  +VA   S++EKSK LY+   K ++  +VV    R ++MN
Sbjct: 279 LEYMLEHGGLVALEASSIEKSKLLYDTLDKHDLYISVVEPAAR-SRMN 325


>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 401 TSFLSVKARPSRLYISLIAFSAKISLNSTGKQCPDDVLGA 282
           TS++ +KAR   L  S + FS ++ ++ T    P   L A
Sbjct: 80  TSYVDLKARTLTLLTSNLTFSDRLRVDETVTYSPHPELEA 119


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -2

Query: 260 VLMQFILLFRISLFTTFVMTSLFFSS 183
           ++++  + + +S F +F  +S+FFSS
Sbjct: 1   MVLKHSVTYNLSFFISFTFSSIFFSS 26


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 88  SDVPNDILEEQLYNSVVVADYDSAVEKSKHLY 183
           S +P  I E Q  +     +     EKSKHLY
Sbjct: 129 SHIPGMITENQTNDDAKEVNGSDVDEKSKHLY 160


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 86  IPTSLTTFWRSSFTIASSSPITT 154
           +P + T    S++TI+SS+P+T+
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTS 524



 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 86  IPTSLTTFWRSSFTIASSSPITT 154
           +P + T    S++TI+SS+P+T+
Sbjct: 561 VPYTSTPVTSSNYTISSSTPVTS 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,474,846
Number of Sequences: 5004
Number of extensions: 25656
Number of successful extensions: 123
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)