Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20009X
         (408 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0068 + 471729-472460,472578-472655,473270-473507,474130-47...    29   1.1  
03_06_0460 - 34098115-34098622,34098981-34099355,34100939-341011...    27   4.3  
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617     27   5.7  
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    27   5.7  
10_08_0589 + 19022233-19022457,19022578-19022709,19023129-190232...    27   7.6  
08_02_0718 + 20382323-20385046                                         27   7.6  

>08_01_0068 +
           471729-472460,472578-472655,473270-473507,474130-474205,
           474820-474961,475326-475619,476037-476249
          Length = 590

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 195 ERSHHKCREQTDTKQQDELHEYAYQLWLQGSKDIVRALFPS 317
           E + H+ +E T+T Q+ E+ +Y  Q   Q    +   LFPS
Sbjct: 513 EIAQHQHKEPTETSQEIEMEDYPIQKENQSFLQLCARLFPS 553


>03_06_0460 -
           34098115-34098622,34098981-34099355,34100939-34101156,
           34101235-34101297
          Length = 387

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 101 LGTSESAAYRDATKRHRITIAGIIFGAS 18
           +G +++A+Y  +T R  + +AG + GAS
Sbjct: 284 VGAADAASYCGSTSRRMVQVAGEVLGAS 311


>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
          Length = 988

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 103 DILEEQLYNSVVVADY--DSAVEKSKHLYEEKKSEVITNVVNKLIRNNK 243
           DIL E LY S  ++DY  D      ++L +  +   + N++ + ++NN+
Sbjct: 237 DILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKEYLKNNR 285


>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
            2353031-2353708,2353800-2353964,2354139-2354433,
            2354581-2354795,2354885-2355190,2355269-2355332,
            2355426-2355665,2355783-2355886
          Length = 1505

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 62   SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 157
            +W + +L +P ++   W   + IASS  +T +
Sbjct: 1080 TWQVLILIVPMAVACMWMQRYYIASSRELTRI 1111


>10_08_0589 +
           19022233-19022457,19022578-19022709,19023129-19023227,
           19023384-19023431,19023926-19023976,19024205-19024273,
           19024337-19024419,19024643-19024766,19024843-19024902,
           19024983-19025225,19025426-19025509,19025581-19025728,
           19025909-19025986,19025987-19026114,19026204-19026251,
           19026922-19027052,19027708-19027817,19028365-19028468,
           19028614-19028684,19029091-19029389,19029507-19029682
          Length = 836

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 40  AIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVV 219
           AIV L LFV SL   D+D+ N  L + + +S  +  Y   V+  +    +   +++ N  
Sbjct: 140 AIVSLMLFVESLQILDADI-NKSLVKSIQDSPELRRYREQVQVLESRLYQLMDKLVRNAD 198

Query: 220 NK 225
           N+
Sbjct: 199 NE 200


>08_02_0718 + 20382323-20385046
          Length = 907

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 205 ITNVVNKLIRNNKMNCMSTPINFGSRAPRTSSGHCFPVEFRLI 333
           I N  +  + +N    + T   FG+ +  T+S H F V FRL+
Sbjct: 526 IINTNDDFLEDNSCTNLRTLFVFGASSISTTSLHAFLVGFRLL 568


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,702,262
Number of Sequences: 37544
Number of extensions: 167676
Number of successful extensions: 615
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)