Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20009X
         (408 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22757| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.36 
SB_28952| Best HMM Match : Dynamin_N (HMM E-Value=7.7e-09)             28   2.6  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015)                    28   3.4  
SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)                     27   4.5  
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)                 27   4.5  
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_51696| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)                 27   7.8  

>SB_22757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 13  GLDAPKMIPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEK 168
           G  +P ++PA  ++       Y  D D+P + L EQ+ + + VA +  +VE+
Sbjct: 514 GFASPFVLPAKNLMQDLCRDGYGLDEDIPAEYLTEQVASGIEVAQWAVSVER 565


>SB_28952| Best HMM Match : Dynamin_N (HMM E-Value=7.7e-09)
          Length = 323

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
 Frame = +1

Query: 157 AVEKSKHLYEEKKSEVITNVVNK---LIRNNKMNC-MSTPIN--FGSRAPRTSSGHCFPV 318
           A   S+ LY E +   ++  + +   LI   + NC  S+ IN   G+R   T +  C   
Sbjct: 101 ATNLSESLYTEAERSKVSKFLTQTPALIVTGQTNCGKSSIINEFLGARVVPTKAQPCTAR 160

Query: 319 EFRLIFAENAIKLMYKRDGLALTLR 393
             R+ ++E     + KRDG  L  R
Sbjct: 161 IVRMTYSETPYVRLVKRDGTELERR 185


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 83  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 214
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445



 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 83  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 214
           +IPTS     R SFT+    P + VR  R S +T  RR  +S++
Sbjct: 146 RIPTSRVRQTRLSFTMVRRIPTSRVRQTRLS-FTMVRRIPTSRV 188


>SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 19/70 (27%), Positives = 27/70 (38%)
 Frame = +1

Query: 88  SDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMSTPI 267
           SDVP  +     Y +  + D DSA + S       KS +  N V +        C S   
Sbjct: 42  SDVPEPVAASTPYQTRELRDMDSANDGSSLKKHTDKSNMAHNAVERFSTETTSVCRSVSE 101

Query: 268 NFGSRAPRTS 297
              S+ P +S
Sbjct: 102 ESQSQEPISS 111


>SB_41325| Best HMM Match : SWIM (HMM E-Value=0.015)
          Length = 950

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 120 LLLQNVVRDVGICSIQRCHEKT*NNYSGNHLWSVESCVL 4
           LL +N V+DV    ++   EK  N+ S  +LW  ++C L
Sbjct: 105 LLEENAVKDV--LQVESASEKPKNDTSARYLWKNDNCNL 141


>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 172 KHLYEEKKSEVITNVVNKLIRNNKMNCMSTPINFGSRAPRTSSGHCFPVEFRLIF 336
           K L E+K++E   +V+NK+   N          + ++A  T +    PVEF L+F
Sbjct: 175 KKLPEDKRNEY-QSVLNKIDNYNMQELGELIKKYDAKATTTGNDLSDPVEFNLMF 228


>SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1019

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 238 NKMNCMSTPINFGSRAPRTSSGHCFPVEFRLIFAENAIKLMYKRDGLALTLRN 396
           NK  C+STPI        TS  +CF VE      +    ++ KRD  A  +R+
Sbjct: 314 NKSKCLSTPIQLPKLG--TSDHYCFLVENNRPRIKPTKTVVTKRDTRASCIRS 364


>SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)
          Length = 359

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 238 NKMNCMSTPINFGSRAPRTSSGHCFPVEFRLIFAENAIKLMYKRDGLALTLRN 396
           NK  C+STPI        TS  +CF VE      +    ++ KRD  A  +R+
Sbjct: 79  NKSKCLSTPIQLPKLG--TSDHYCFLVENNRPRIKPTKTVVTKRDTRASCIRS 129


>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
          Length = 867

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 238 NKMNCMSTPINFGSRAPRTSSGHCFPVEFRLIFAENAIKLMYKRDGLALTLRN 396
           NK  C+STPI        TS  +CF VE      +    ++ KRD  A  +R+
Sbjct: 314 NKSKCLSTPIQLPKLG--TSDHYCFLVENNRPRIKPTKTVVTKRDTRASCIRS 364


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +1

Query: 118 QLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMSTPINFGSRAPRTS 297
           ++YNS+    Y+S   K  +    K +  + N +   + N + NC++  IN    +   S
Sbjct: 325 EIYNSLDNKIYNSLDNKIYNSLNNKINNSLDNKIYNSLDNKRYNCLNFHINTDHHSYHAS 384

Query: 298 S 300
           S
Sbjct: 385 S 385



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +1

Query: 118 QLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMSTPINFGSRAPRTS 297
           ++YNS+    Y+S   K  +    K +  + N +   + N + NC++  IN    +   S
Sbjct: 418 EIYNSLDNKIYNSLDNKIYNSLNNKINNSLDNKIYNSLDNKRYNCLNFHINTDHHSYHAS 477

Query: 298 S 300
           S
Sbjct: 478 S 478


>SB_51696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 145 DYDSAVEKSKHLYEEKKSE 201
           DYD ++EK  HL+++K+ +
Sbjct: 189 DYDRSLEKDAHLHDDKRDD 207


>SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)
          Length = 414

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 55  CLFVASLYA-ADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSE 201
           CL  ++ Y   DS VP +  +    +   V  YD+  + ++ +Y +KK E
Sbjct: 175 CLTHSACYLKGDSPVPENTNDAYTNSRYAVRQYDALQQLTRIIYTDKKKE 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,184,615
Number of Sequences: 59808
Number of extensions: 198183
Number of successful extensions: 698
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)