Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20009X
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   0.56 
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   0.56 
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    29   0.98 
Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z48055-7|CAO78722.1|  452|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    27   5.2  
AC006642-6|AAF39829.1|  146|Caenorhabditis elegans Hypothetical ...    27   5.2  
U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPas...    26   9.1  
AF099925-13|AAC69503.2|  287|Caenorhabditis elegans Hypothetical...    26   9.1  
AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane cal...    26   9.1  
AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane cal...    26   9.1  
AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane cal...    26   9.1  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 145 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 255
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 145 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 255
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -2

Query: 290 LGALEPKLIGVLMQFILLFRISLFTTFVMTSLFFSSYK 177
           LGAL    +G L   I LF +S FTT  +  L FS YK
Sbjct: 194 LGALIEGELGTL---ISLFNVSPFTTVTVDQLLFSGYK 228


>Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical
           protein K09E4.2 protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -1

Query: 354 LNRVFGEDKSELNWETMPGRCPWSPGAKVDRRTHAVHLVVSYQFV 220
           L RVF   K  +NW  +P   P   G  +D+R HA  LV    F+
Sbjct: 243 LGRVF-MFKWTVNWRFLPEEVPPPAGFFLDKRFHAALLVGHLTFL 286


>Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical
           protein F36F2.3b protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 119 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 217
           SFT+ASS P T +R+++ S  +  +  +  + S
Sbjct: 285 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 317


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
            F36F2.3a protein.
          Length = 1128

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 119  SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 217
            SFT+ASS P T +R+++ S  +  +  +  + S
Sbjct: 1050 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 1082


>Z48055-7|CAO78722.1|  452|Caenorhabditis elegans Hypothetical
           protein T07A5.7 protein.
          Length = 452

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 175 HLYEEKKSEVITNVVNKLIRNNKMNCMSTPINFGSRAPRT-SSGHCFPVEFRLIFAENAI 351
           HLY++ +   IT   +K ++ +K+N       +GSR  R   S +   +E +    +  I
Sbjct: 328 HLYQKHRQAYITATNDKALKKSKIN------TYGSRKSRALHSMNIAELELKKCILQFKI 381

Query: 352 KLMYKRDGLALTLRNDVQ 405
           K   +R+ L   + N ++
Sbjct: 382 KKFERREKLLEEVENQIK 399


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 52  LCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSE 201
           LC F +       DV     EE+L +   VAD+   V++ K   +E+  E
Sbjct: 382 LCFFFSEARRLGIDVGGLEQEEKLLSGKAVADFKQRVKEEKDAEKERAKE 431


>AC006642-6|AAF39829.1|  146|Caenorhabditis elegans Hypothetical
           protein F49H12.3 protein.
          Length = 146

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 102 VRDVGICSIQRCHEKT*NNYSGNHLWSVESC 10
           +RD  IC +Q C  K  +NY    L    SC
Sbjct: 101 LRDQAICMLQLCSNKNDSNYINEMLAKSTSC 131


>U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical
           protein B0495.8a protein.
          Length = 313

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +1

Query: 85  DSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 222
           DS + N +   +++     ADY+ A ++  H Y+    E+I + V+
Sbjct: 49  DSRLQNVVSCRKVHEPAHKADYERAQKEKDHFYDVDAFEIIEHAVH 94


>AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1237

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 162 NRTVVIGDDDAIVKLLLQNVVRDVGICSIQRCHE 61
           N  +++GD  AI  L +Q+ VR     +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667


>AF099925-13|AAC69503.2|  287|Caenorhabditis elegans Hypothetical
           protein K01A2.1 protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 335 KISLNSTGKQCPDDVLGALEPKLIGVLMQFILLFRISLFT 216
           +I+  + G    D+V G    +LI  L+   +LF ISL T
Sbjct: 7   QITDENVGNSIGDEVTGLRAKRLIATLICLFVLFIISLIT 46


>AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform b protein.
          Length = 1234

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 162 NRTVVIGDDDAIVKLLLQNVVRDVGICSIQRCHE 61
           N  +++GD  AI  L +Q+ VR     +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667


>AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform a protein.
          Length = 1160

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 162 NRTVVIGDDDAIVKLLLQNVVRDVGICSIQRCHE 61
           N  +++GD  AI  L +Q+ VR     +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667


>AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform c protein.
          Length = 1137

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 162 NRTVVIGDDDAIVKLLLQNVVRDVGICSIQRCHE 61
           N  +++GD  AI  L +Q+ VR     +I RC E
Sbjct: 634 NEEMIVGDMTAIAVLGIQDPVRPEVPAAITRCQE 667


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,265,134
Number of Sequences: 27780
Number of extensions: 147865
Number of successful extensions: 700
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)