Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20009X
(408 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b... 35 0.018
At5g18700.1 68418.m02219 protein kinase-related contains protein... 29 1.6
At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putati... 28 2.8
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f... 28 2.8
At1g70400.1 68414.m08098 hypothetical protein similar to U4/U6 s... 28 2.8
At1g54920.2 68414.m06269 expressed protein 28 2.8
At4g29905.1 68417.m04255 expressed protein 27 3.7
At1g59453.1 68414.m06679 transcription factor-related weak simil... 27 3.7
At1g59077.1 68414.m06670 hypothetical protein 27 3.7
At1g58766.1 68414.m06659 hypothetical protein 27 3.7
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 27 3.7
At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family pr... 27 4.8
At2g04620.1 68415.m00470 cation efflux family protein potential ... 27 4.8
At2g03020.2 68415.m00255 heat shock protein-related Prosite PS00... 27 4.8
At2g03020.1 68415.m00254 heat shock protein-related Prosite PS00... 27 4.8
At5g47690.1 68418.m05887 expressed protein 27 6.4
At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recogniti... 27 6.4
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890... 27 6.4
At1g09420.1 68414.m01054 glucose-6-phosphate 1-dehydrogenase, pu... 27 6.4
At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative / phos... 26 8.5
At1g71360.1 68414.m08237 expressed protein low similarity to PIR... 26 8.5
>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
binding region-containing protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 485
Score = 35.1 bits (77), Expect = 0.018
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +1
Query: 16 LDAPKMIPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 195
+D ++P+ +I+ + V +L S +P D+L++ L D DSA +K E K
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213
Query: 196 SEVITNV 216
+ N+
Sbjct: 214 GSIAPNL 220
>At5g18700.1 68418.m02219 protein kinase-related contains protein
kinase domain, INTERPRO:IPR000719
Length = 1366
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 199 EVITNVVNKLIRNNKMNCMSTPINFGSRAPRTSSGHCFPVEFRLI 333
+ ITN + +L+ + +S P+N SRAP ++ H FPV L+
Sbjct: 918 DTITNDIQQLMTGRRHGPVS-PLN--SRAPVKTNAHLFPVVLHLL 959
>At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putative
similar to pentacyclic triterpene synthase [gi:6650207]
[PMID: 11247608] Contains Pfam domain PF00432:
Prenyltransferase and squalene oxidase repeat
Length = 758
Score = 27.9 bits (59), Expect = 2.8
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +1
Query: 166 KSKHLYEEKKSEVITNVVNKLIRNNKMNCMSTPINFGSRAPRTSSGHCFPVEFRLI 333
KS H++ E S + +NKLIR + I++ + R +G C P F ++
Sbjct: 327 KSVHMFSE--SILDRWPLNKLIRQRALQSTMALIHYHDESTRYITGGCLPKAFHML 380
>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
family protein contains Pfam profile PF01812
5-formyltetrahydrofolate cyclo-ligase
Length = 354
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 296 RPGIVSQLSSDLSSPKTRLSLCTSATVS 379
R G S L SDL P+T + CTS V+
Sbjct: 174 RTGFFSVLESDLLKPETIMEACTSVGVA 201
>At1g70400.1 68414.m08098 hypothetical protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847
Length = 168
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 16 LDAPKMIPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEK 168
+D ++P+ +I+ L V +L + +P D+L + + D DSA +K
Sbjct: 104 VDLEGLLPSAMIMVLLVTALTTKGNQLPEDVLLKTIDACDRALDLDSARKK 154
>At1g54920.2 68414.m06269 expressed protein
Length = 890
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 351 NRVFGEDKSELNWETMPGRCPWSP-GAKVDRRTHAVHLVVSYQFVHD 214
NR+ E KS+ NW T G P S G + + T + V S+ F D
Sbjct: 49 NRIESEKKSQANWVTSRGPVPLSVFGEEEEDDTESSASVPSFGFSFD 95
>At4g29905.1 68417.m04255 expressed protein
Length = 67
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 354 LNRVFGEDKSELNWETMPGRCPWSPG 277
L V+ E+K+EL + PG CP+ G
Sbjct: 3 LEVVYHEEKTELGRQQAPGMCPYCGG 28
>At1g59453.1 68414.m06679 transcription factor-related weak similarity
to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
Length = 1729
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 109 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 216
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581
>At1g59077.1 68414.m06670 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 109 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 216
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g58766.1 68414.m06659 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 109 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 216
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 27.5 bits (58), Expect = 3.7
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +2
Query: 62 SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 157
+W + +L +P ++ FW + +ASS + +
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117
>At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 509
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 293 HRPGIVSQLSSDLSSPKTRLSLCTSATVSL*R 388
H G++ + S+ TR+SLCT +SL R
Sbjct: 200 HEQGLIQLRKTTRSNETTRISLCTDRILSLLR 231
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.1 bits (57), Expect = 4.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 126 VKLLLQNVVRDVGICSIQRCH 64
+K ++N+++ G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747
>At2g03020.2 68415.m00255 heat shock protein-related Prosite
PS00430: TonB-dependent receptor proteins signature 1;
contains some similar to Small heat shock protein,
chloroplast precursor (SP:P30222) {Petunia hybrida}
Length = 247
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 405 LNIISQRQSETVALVHKLNRVFGEDKSELNWETMPG 298
L++ R ETV + K +V D +E ++TM G
Sbjct: 58 LSVYHNRSQETVVVFAKAPKVHTHDSTERRYQTMTG 93
>At2g03020.1 68415.m00254 heat shock protein-related Prosite
PS00430: TonB-dependent receptor proteins signature 1;
contains some similar to Small heat shock protein,
chloroplast precursor (SP:P30222) {Petunia hybrida}
Length = 255
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 405 LNIISQRQSETVALVHKLNRVFGEDKSELNWETMPG 298
L++ R ETV + K +V D +E ++TM G
Sbjct: 58 LSVYHNRSQETVVVFAKAPKVHTHDSTERRYQTMTG 93
>At5g47690.1 68418.m05887 expressed protein
Length = 1638
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +1
Query: 103 DILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIR 234
D+LE++ Y V+ + + +YE ++SEV+ + +K+++
Sbjct: 734 DMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEFIRSKILK 777
>At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein
/phosphatidylinositol-4-phosphate 5-kinase-related low
similarity to phosphatidylinositol-4-phosphate 5-kinase
AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
Pfam profile PF02493: MORN repeat
Length = 471
Score = 26.6 bits (56), Expect = 6.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 65 WHLCMLQIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAK 202
W +L PT TT SSF+I+ S + TV+ R + R K
Sbjct: 385 WEDGVLNCPTEQTTRPDSSFSISHSKVVDTVQQARKAAKKAREVVK 430
>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
At1g39430, At2g10460, At4g03640, At5g35250
Length = 509
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 49 ILCLFVASLYAA-DSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 222
+LC+ +++ DS + + + + +V DYD+ V+ S + E+ S ++TN V+
Sbjct: 405 LLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLMLTNGVD 463
>At1g09420.1 68414.m01054 glucose-6-phosphate 1-dehydrogenase,
putative / G6PD, putative similar to SP|Q43839
Glucose-6-phosphate 1-dehydrogenase, chloroplast
precursor (EC 1.1.1.49) (G6PD) {Solanum tuberosum};
contains Pfam profiles PF02781: Glucose-6-phosphate
dehydrogenase C-terminal, PF00479: Glucose-6-phosphate
dehydrogenase NAD binding domain; gc exon splice site at
20574 is based on protein alignment, and is not
confirmed experimentally
Length = 625
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 290 GHRPGIVSQLSSDLSSPKTRLSLC 361
G P + QLS DLS + R SLC
Sbjct: 132 GDLPPVSKQLSDDLSDVRRRASLC 155
>At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus]; contains Pfam PF00650 :
CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
N-terminus; supporting cDNA gi|23463078|gb|BT000834.1|
Length = 543
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 43 IVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKS 171
++ L + V ++ +VP + E LY+S V D D+++ KS
Sbjct: 405 VMALVMGVVTMIKVTKNVPRKLTESTLYSSPVYCD-DASMNKS 446
>At1g71360.1 68414.m08237 expressed protein low similarity to
PIR|JC7185 chromosome 1 C1orf9 protein [Homo sapiens]
Length = 459
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 330 KSELNWETMPGRCPWSPGAKVDRRTHAVHL 241
+SE+N T+PG + G+K+D+ + AV L
Sbjct: 3 QSEINNNTVPGNDTETTGSKLDQLSRAVPL 32
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,767,212
Number of Sequences: 28952
Number of extensions: 136615
Number of successful extensions: 603
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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