Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20003
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   0.54 
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   0.94 
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    27   1.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   2.9  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   2.9  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    25   3.8  
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    25   3.8  
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi...    25   3.8  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    24   8.8  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 0.54
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 111 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 227
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595



 Score = 23.8 bits (49), Expect = 8.8
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 275 PLSITGXEVHGVPLAVFDQTLNGFLDNLSLLFLQIFRAFGDSGLVFTNDDTHIQ 114
           PL +   EV        D+  +  L N+ +LFL  +RA   S L  ++  T ++
Sbjct: 7   PLPLHSNEVQAAESISKDELYSWTLKNVLILFLVQYRASTPSALQTSSFSTPVE 60


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 27.1 bits (57), Expect = 0.94
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 239 EHHGLPYQLWTKDGK 283
           EHH  PY  WT+ GK
Sbjct: 292 EHHDFPYVAWTRIGK 306


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 285 SFPSFVHNWXGSPWCSSCRFRS 220
           S+  FV  +  SPW S+CR  S
Sbjct: 144 SYTPFVMQYLNSPWFSACRVES 165


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 193 SPFFSFRYSEHLAIAVSYSPMTTLIYSCPP 104
           +PFF   +S HL    S S  + + YS PP
Sbjct: 343 APFFPLGFSPHLNDESSRSRWSNISYSPPP 372


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +3

Query: 129 VIGEYETAIAKC-SEYLKEKKGE---VIKEAVKRLIENGKRNTMDFXTSYGQRME 281
           ++ ++E A++ C S Y  + + E   ++   + +  ++G  N +DF T Y  R++
Sbjct: 742 ILNDWEGALSYCNSVYSIDGETEPYYMLLAEISKNYKSGSLNILDFITKYSSRLD 796


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 53  CVRWLLTPHLHQELMTYWRTAVYECRHW 136
           C +W+  PH   E++ Y   A+   +HW
Sbjct: 206 CFKWITGPHYLGEIIVYTGIALI-AQHW 232


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 272 LSITGXEVHGVPLAVFDQTLN 210
           L   G EVH VP+A F   LN
Sbjct: 116 LKFLGAEVHPVPVAPFSNPLN 136


>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 245 GVPLAVFDQTLNGFLDNLSLLFLQIFRAFGDSGLVFTNDDTHIQLSASTSSVLG 84
           G+PLA      +  LDN+S  F     +FG  G   T    H +L+++ S  +G
Sbjct: 149 GIPLA------SEMLDNISPQFFADLLSFGAIGARTTESQLHRELASALSFPVG 196


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 217 RLTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYS 113
           +L  SL+ S FFS  YSE   +   +  +   IYS
Sbjct: 2   KLLISLLWSIFFSIVYSEKTLLNFKHYELCNGIYS 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,457
Number of Sequences: 5004
Number of extensions: 26889
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)