Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20003
(371 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0641 + 18261332-18262423 31 0.29
05_03_0618 - 16262826-16263097,16263111-16263183 28 2.0
04_03_1035 - 21887562-21890030 27 3.6
03_02_0950 + 12661008-12662312,12662403-12662576 27 3.6
12_02_1261 + 27410921-27413401 27 4.7
11_06_0181 + 20985960-20987825,20987904-20989169 27 6.2
10_01_0066 + 848523-849269,849520-849741 27 6.2
10_01_0065 + 845447-846187,846969-847193 27 6.2
11_01_0354 + 2665570-2665601,2665796-2665894,2667158-2667202,266... 26 8.2
10_02_0060 - 4808506-4808535,4808564-4809588,4810125-4810292,481... 26 8.2
07_03_1773 - 29422660-29422806,29423103-29423201,29423811-294239... 26 8.2
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 26 8.2
>04_03_0641 + 18261332-18262423
Length = 363
Score = 31.1 bits (67), Expect = 0.29
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = -2
Query: 271 CP*LVXKSMVFLLPFSIRRLTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCP 107
CP L + + LP S+R+L SL+ P F + HLA +V+ + + SCP
Sbjct: 267 CPNLNTRR-IMTLPSSLRKL--SLLGCPSIEFIDNSHLASSVTLKGLNLKLVSCP 318
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 93 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 7
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>04_03_1035 - 21887562-21890030
Length = 822
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 120 MSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNT 245
MS V+G E A+A C EY + G + A+ R +G T
Sbjct: 781 MSEVVGVLERAVAACDEYEEGGAGAGGEPALSRSCTDGSTAT 822
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 132 IGEYETAIAKCSEYLKEKKGEV 197
+GEY+ AIA CS+ L++ K V
Sbjct: 423 VGEYKKAIADCSKVLEKDKDNV 444
>12_02_1261 + 27410921-27413401
Length = 826
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 176 QIFRAFGDSGLVFTNDDTHIQLSASTSSVLGASVALEASAHTART 42
++ AFG GLV ++ ++ + S V G S EA+ ++A T
Sbjct: 688 ELLSAFGKFGLVIESETDIVKDTHSARVVFGKSAEAEAAYNSAET 732
>11_06_0181 + 20985960-20987825,20987904-20989169
Length = 1043
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 38 PSSSPCVRWLLTPHLHQELMTYWRTAVYEC 127
PS+S V W + PH + + Y R + C
Sbjct: 161 PSASVLVFWTICPHCQKRFLYYQRNFLARC 190
>10_01_0066 + 848523-849269,849520-849741
Length = 322
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 232 ARGTPWTSXPVMDKG 276
A+GTPW S VMD G
Sbjct: 220 AKGTPWGSAAVMDSG 234
>10_01_0065 + 845447-846187,846969-847193
Length = 321
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 232 ARGTPWTSXPVMDKG 276
A+GTPW S VMD G
Sbjct: 218 AKGTPWGSAAVMDSG 232
>11_01_0354 +
2665570-2665601,2665796-2665894,2667158-2667202,
2667293-2667356,2667497-2667709,2669960-2670160
Length = 217
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 117 YMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDF 254
++ + +YE I + E+L+ G++I +K + G MDF
Sbjct: 89 FIRPTVMQYEPNIEQRLEHLRANSGQLIAFYIKNFADKGTAFFMDF 134
>10_02_0060 -
4808506-4808535,4808564-4809588,4810125-4810292,
4811202-4811652
Length = 557
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 108 GQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAV 212
G++YM + G + AI K + +E+K E +E +
Sbjct: 270 GKVYMGTLKGGQQVAIKKSKKVDEERKSEFTQEVI 304
>07_03_1773 -
29422660-29422806,29423103-29423201,29423811-29423915,
29423990-29424136,29424436-29424954
Length = 338
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 132 IGEYETAIAKCSEYLKEKKGE-VIKEAVKRLIENGKRNTMD 251
I AI C E +++ KG+ V+KEA + + E R MD
Sbjct: 261 ISVLNNAIKACGETIEKHKGKLVVKEAPRAVSEREDRLFMD 301
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 292 DDFLSILCP*LVXKSMVFLLPFSIRRLTASLITSPFF 182
DD + LCP V +PF+ +R+ A L + F+
Sbjct: 527 DDLSTKLCPVEAFLKAVLDIPFAFKRMDAMLYVANFY 563
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,888,574
Number of Sequences: 37544
Number of extensions: 186927
Number of successful extensions: 617
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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