Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20003
         (371 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_31542| Best HMM Match : FeS (HMM E-Value=1.6)                       27   6.4  
SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)                    27   6.4  
SB_18748| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-08)          26   8.5  
SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)                   26   8.5  
SB_49703| Best HMM Match : PAN (HMM E-Value=0.015)                     26   8.5  
SB_27882| Best HMM Match : Cob_adeno_trans (HMM E-Value=3.6)           26   8.5  
SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)                26   8.5  

>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +3

Query: 171 YLKEKKGEVIKEAVKRLIENGKRNTMDFXTSYGQRME 281
           + +E+ GE   EA KRLI+ GK+  M F    G+R++
Sbjct: 676 FREEEDGESFAEAKKRLIKQGKQQIM-FLLYIGKRIK 711


>SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 171 YLKEKKGEVIKEAVKRLIENGKRNTMDFXTS 263
           ++  KK  +IKEA+KR+++N +R  +   TS
Sbjct: 175 FVDGKKLRMIKEAIKRILKNNRRLKIPKVTS 205


>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 259 VXKSMVFLLPFSIRRLTASLITSPFFSFRYSEHLAIAVSYSPMTTLI 119
           V  S  F    S+  LT++  T PF S   S  L+   S  P+T+LI
Sbjct: 481 VTASAAFSSVQSLTELTSTAFTQPFSSDTPSTALSSISSAQPLTSLI 527


>SB_31542| Best HMM Match : FeS (HMM E-Value=1.6)
          Length = 553

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 177 KEKKGEVIKEAVKRLIENGKRNTMDFXTSYGQRMER 284
           K K G  +  A KR+ + G R    F T  G  +ER
Sbjct: 227 KNKTGNELVMAFKRIFKEGGRKPDKFQTDDGSELER 262


>SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)
          Length = 445

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 311 GWGSKI*RFP-FHPLSITGXEVHGVPLAVFDQTLNGFLDNLSLLF 180
           G+G  +   P FH +SI+G    GVP+    Q     ++ L + F
Sbjct: 151 GYGGSLDSMPYFHRVSISGGNTSGVPVEELKQAAKLLVEALFIRF 195


>SB_18748| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-08)
          Length = 398

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 247 MVFLLPFSIRRLTASLITSPFFSFRYSEHLAIAVSYSPMTTLI 119
           +V +LPF+    T + IT   F F ++  +    SY  +TTL+
Sbjct: 6   LVSVLPFARSHDTLAGITRDDFEFNFANFIKHESSYLNVTTLV 48


>SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)
          Length = 338

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 85  VQVWR*KPAHTRRGRRQTKSVSSWRSGY 2
           V+V R +P H R     + S++ WRS Y
Sbjct: 163 VEVRRAEPGHHRSQASPSLSIAGWRSAY 190


>SB_49703| Best HMM Match : PAN (HMM E-Value=0.015)
          Length = 172

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 247 MVFLLPFSIRRLTASLITSPFFSFRYSEHLAIAVSYSPMTTLI 119
           +V +LPF+    T + IT   F F ++  +    SY  +TTL+
Sbjct: 6   LVSVLPFARSHDTLAGITRDDFEFNFANFIKHESSYLNVTTLV 48


>SB_27882| Best HMM Match : Cob_adeno_trans (HMM E-Value=3.6)
          Length = 822

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 99  RTGGQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENG 233
           + GGQ+ +  ++G       K  EYL   +G++++   K+L   G
Sbjct: 245 KRGGQIAVGALVGIDAGICEKGREYLVYTRGKILERFEKKLATTG 289


>SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)
          Length = 503

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 150 AIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFXTSYGQ 272
           A+    + ++++K ++ K+  KRLIE  +RN       +GQ
Sbjct: 156 ALQDQQKQVEQEKEQMRKDFEKRLIEEKERNVQGTMAEFGQ 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,355,135
Number of Sequences: 59808
Number of extensions: 221939
Number of successful extensions: 679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)