Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20003
         (371 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    25   0.69 
AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein p...    24   2.1  
CR954256-10|CAJ14151.1|  548|Anopheles gambiae putative alkaline...    23   2.8  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   2.8  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            22   6.4  

>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 233 QEEHHGLPYQLWTKDGKEIVKSYFPIQ 313
           Q +    PYQLW + G  +V    PI+
Sbjct: 6   QPQQVSAPYQLWPRKGSVVVMQPQPIE 32


>AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein
           protein.
          Length = 285

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 68  LTPHLHQELMTYWR 109
           L P  HQE MT WR
Sbjct: 100 LAPMSHQETMTLWR 113


>CR954256-10|CAJ14151.1|  548|Anopheles gambiae putative alkaline
           phosphatase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 75  GVRSQRTHGEDEGKQSQSH 19
           G+R +RT GED  K  Q H
Sbjct: 284 GIRGRRTDGEDLIKHWQHH 302


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 117 YMSVVIGEYETAIAKCSEYLKEKKGEV 197
           YM  +I + E    +C + LKEK  +V
Sbjct: 550 YMEAIIVDTEKTARRCIQILKEKMLDV 576


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 102  YVISSWCKCGVRSQRTHGEDEGKQS 28
            +++S+WC   +    TH  D  K S
Sbjct: 1426 HIMSNWCYAEMTIDTTHTADGSKLS 1450


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 369,999
Number of Sequences: 2352
Number of extensions: 6580
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 28374390
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)