Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20003
(371 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024202-12|AAF36031.2| 143|Caenorhabditis elegans Hypothetical... 32 0.15
Z95559-10|CAB63364.2| 327|Caenorhabditis elegans Hypothetical p... 28 2.4
Z81068-8|CAB02988.1| 490|Caenorhabditis elegans Hypothetical pr... 27 3.2
U80447-7|AAB37811.1| 518|Caenorhabditis elegans Hypothetical pr... 27 3.2
U23172-16|AAC46524.1| 757|Caenorhabditis elegans Hypothetical p... 27 5.7
Z95559-7|CAB76730.2| 329|Caenorhabditis elegans Hypothetical pr... 26 7.5
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 26 7.5
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 26 7.5
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 26 7.5
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 26 7.5
Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical pr... 26 9.9
U53332-8|AAL32224.1| 459|Caenorhabditis elegans Ceramide glucos... 26 9.9
U53332-7|AAM15582.1| 379|Caenorhabditis elegans Ceramide glucos... 26 9.9
U53332-6|AAL32225.1| 470|Caenorhabditis elegans Ceramide glucos... 26 9.9
DQ178634-1|ABD75713.1| 470|Caenorhabditis elegans ceramide glyc... 26 9.9
DQ178633-1|ABD75712.1| 470|Caenorhabditis elegans ceramide glyc... 26 9.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 9.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 9.9
AF016658-2|AAB66041.2| 271|Caenorhabditis elegans Hypothetical ... 26 9.9
AF016658-1|ABA03120.1| 306|Caenorhabditis elegans Hypothetical ... 26 9.9
AC091124-1|AAK27878.1| 255|Caenorhabditis elegans Hypothetical ... 26 9.9
>AC024202-12|AAF36031.2| 143|Caenorhabditis elegans Hypothetical
protein Y71H2B.1 protein.
Length = 143
Score = 31.9 bits (69), Expect = 0.15
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 114 LYMSVVIGEYETAIA-KCSEYLKEKKGEVIKEAVKRLIE 227
LYM +G+Y+ A KC +Y K+ G+ EA++ I+
Sbjct: 87 LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125
>Z95559-10|CAB63364.2| 327|Caenorhabditis elegans Hypothetical
protein Y41E3.15 protein.
Length = 327
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = -3
Query: 363 SLLXMSLTVCSVKITXNWMGK*DLTISFPSFVH---NWXGSPWCSSC 232
S++ M TVCS I+ + + + S+PSF++ + WC+SC
Sbjct: 76 SIIDMIATVCSCFISGSLFIQGAVFCSYPSFIYITGTIVLTTWCTSC 122
>Z81068-8|CAB02988.1| 490|Caenorhabditis elegans Hypothetical
protein F25H5.7 protein.
Length = 490
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 117 YMSVVIGEYETAIAKCSEYLKEKKGEVIK 203
Y+ ++ +E + KC+ Y EK GEV+K
Sbjct: 270 YVLMLCTLFEGGVEKCALYYPEKLGEVVK 298
>U80447-7|AAB37811.1| 518|Caenorhabditis elegans Hypothetical
protein F55F8.7 protein.
Length = 518
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 117 YMSVVIGEYETAIAKCSEYLKEKKGEVIK 203
Y+ ++ +E + KC+ Y EK GEV+K
Sbjct: 271 YVLMLCTLFEGGVEKCALYYPEKLGEVVK 299
>U23172-16|AAC46524.1| 757|Caenorhabditis elegans Hypothetical
protein F25B5.2 protein.
Length = 757
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 179 LQIFRAFGDS-GLVFTNDDTHIQLSASTSSVLGASV 75
L++ A +S G +NDD Q +ASTS+V GA +
Sbjct: 722 LKLSVAISESDGPASSNDDFDTQSTASTSTVFGAKI 757
>Z95559-7|CAB76730.2| 329|Caenorhabditis elegans Hypothetical
protein Y41E3.14 protein.
Length = 329
Score = 26.2 bits (55), Expect = 7.5
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -3
Query: 363 SLLXMSLTVCSVKITXNWMGK*DLTISFPSFVHNWXG---SPWCSSC 232
+L MS TVCS I+ K + S+P+F + G + WC +C
Sbjct: 76 TLTDMSATVCSSIISGVLYIKGSVFCSYPTFEYIAGGFAINTWCMAC 122
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 26.2 bits (55), Expect = 7.5
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3
Query: 162 CSEYLKEKKGEVIKEAVKRLIE 227
C+E +K+KK +V +A+KRL++
Sbjct: 436 CAERMKDKKPKVRIQAIKRLMD 457
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 26.2 bits (55), Expect = 7.5
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3
Query: 162 CSEYLKEKKGEVIKEAVKRLIE 227
C+E +K+KK +V +A+KRL++
Sbjct: 436 CAERMKDKKPKVRIQAIKRLMD 457
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 26.2 bits (55), Expect = 7.5
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = -1
Query: 254 EVHGVPLAVFDQTLNGFLDNLSLLFLQI----FRAFGDSGLVFTNDDTH 120
+ G+P +Q L F N + L+I R GD+ +VFTN++ +
Sbjct: 8 QCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDY 56
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 26.2 bits (55), Expect = 7.5
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = -1
Query: 254 EVHGVPLAVFDQTLNGFLDNLSLLFLQI----FRAFGDSGLVFTNDDTH 120
+ G+P +Q L F N + L+I R GD+ +VFTN++ +
Sbjct: 8 QCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDY 56
>Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical
protein C18D1.1 protein.
Length = 645
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 72 RHTCTKN**RTGGQLYMSVVIGEYETAIAKCSEYLKEKKGEV 197
+ C K RT +VI E +T IA +KE++GE+
Sbjct: 320 KEVCNKYFLRTHMLKMHGIVIDENKTVIANIDTSIKEREGEL 361
>U53332-8|AAL32224.1| 459|Caenorhabditis elegans Ceramide glucosyl
transferase protein3, isoform a protein.
Length = 459
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -1
Query: 113 LSASTSSVLGASVALEASAHTARTKANKVSLILAQ 9
+++STSS++GA+ A A A + + + S +L +
Sbjct: 12 VASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 46
>U53332-7|AAM15582.1| 379|Caenorhabditis elegans Ceramide glucosyl
transferase protein3, isoform c protein.
Length = 379
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -1
Query: 113 LSASTSSVLGASVALEASAHTARTKANKVSLILAQ 9
+++STSS++GA+ A A A + + + S +L +
Sbjct: 23 VASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57
>U53332-6|AAL32225.1| 470|Caenorhabditis elegans Ceramide glucosyl
transferase protein3, isoform b protein.
Length = 470
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -1
Query: 113 LSASTSSVLGASVALEASAHTARTKANKVSLILAQ 9
+++STSS++GA+ A A A + + + S +L +
Sbjct: 23 VASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57
>DQ178634-1|ABD75713.1| 470|Caenorhabditis elegans ceramide
glycosyl transferase protein.
Length = 470
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -1
Query: 113 LSASTSSVLGASVALEASAHTARTKANKVSLILAQ 9
+++STSS++GA+ A A A + + + S +L +
Sbjct: 23 VASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57
>DQ178633-1|ABD75712.1| 470|Caenorhabditis elegans ceramide
glycosyl transferase protein.
Length = 470
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -1
Query: 113 LSASTSSVLGASVALEASAHTARTKANKVSLILAQ 9
+++STSS++GA+ A A A + + + S +L +
Sbjct: 23 VASSTSSIIGAAAAAVAEAQPSASPSTSSSFLLLE 57
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 245 HGLPYQLWTKDGKEIV 292
H P +W KDGKEI+
Sbjct: 14477 HPAPEYIWYKDGKEII 14492
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 245 HGLPYQLWTKDGKEIV 292
H P +W KDGKEI+
Sbjct: 14477 HPAPEYIWYKDGKEII 14492
>AF016658-2|AAB66041.2| 271|Caenorhabditis elegans Hypothetical
protein B0047.1a protein.
Length = 271
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 150 AIAKCSEYLKEKKGEVIKEAVK 215
AI KC E+L EK + +K+ VK
Sbjct: 234 AIQKCIEFLSEKSEKPMKDRVK 255
>AF016658-1|ABA03120.1| 306|Caenorhabditis elegans Hypothetical
protein B0047.1b protein.
Length = 306
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 150 AIAKCSEYLKEKKGEVIKEAVK 215
AI KC E+L EK + +K+ VK
Sbjct: 234 AIQKCIEFLSEKSEKPMKDRVK 255
>AC091124-1|AAK27878.1| 255|Caenorhabditis elegans Hypothetical
protein Y47A7.2 protein.
Length = 255
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 180 EKKGEVIKEAVKRLIENGKRNTMDFXTSYGQRMERK 287
E+K +++KEA K NGK+ G+ ER+
Sbjct: 176 EEKKKLLKEATKDCATNGKKGVKKTGKRVGEDRERE 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,179,632
Number of Sequences: 27780
Number of extensions: 154647
Number of successful extensions: 583
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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