Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20003
         (371 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    24   0.50 
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    24   0.50 
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    24   0.50 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   0.88 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   0.88 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.2  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 150 AIAKCSEYLKEKKGEVIKEAVKRLIEN 230
           A+A   +   +K+ EVIK+ +K L+EN
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVEN 97


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 150 AIAKCSEYLKEKKGEVIKEAVKRLIEN 230
           A+A   +   +K+ EVIK+ +K L+EN
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVEN 97


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 150 AIAKCSEYLKEKKGEVIKEAVKRLIEN 230
           A+A   +   +K+ EVIK+ +K L+EN
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVEN 97


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +1

Query: 208 PLSV*SKTARGTPWTSXPVMDKGWKGNRQILLPHPVXS---DLHRA 336
           PL++   TA G P    P + +  +    +LLP P  +   D+H A
Sbjct: 59  PLNIDWSTADGHPVNDVPGVRRVLRNGTLVLLPFPAAAFRQDVHSA 104


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +1

Query: 208 PLSV*SKTARGTPWTSXPVMDKGWKGNRQILLPHPVXS---DLHRA 336
           PL++   TA G P    P + +  +    +LLP P  +   D+H A
Sbjct: 59  PLNIDWSTADGHPVNDVPGVRRVLRNGTLVLLPFPAAAFRQDVHSA 104


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 18  DETDFVCLRPRRVCA 62
           DE +F   RP+R C+
Sbjct: 576 DEVEFYKRRPQRACS 590


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,819
Number of Sequences: 438
Number of extensions: 2155
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)