Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20003
(371 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25040.1 68417.m03592 integral membrane family protein contai... 28 2.3
At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A... 27 3.0
At1g62250.2 68414.m07023 expressed protein 27 4.0
At1g62250.1 68414.m07022 expressed protein 27 4.0
At1g51610.1 68414.m05814 cation efflux family protein / metal to... 27 4.0
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ... 27 5.3
At3g07400.1 68416.m00882 lipase class 3 family protein contains ... 27 5.3
At1g31600.3 68414.m03879 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 5.3
At1g31600.2 68414.m03877 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 5.3
At1g31600.1 68414.m03878 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 5.3
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 26 7.0
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)... 26 9.2
>At4g25040.1 68417.m03592 integral membrane family protein contains
TIGRFAM TIGR01569 : plant integral membrane protein
TIGR01569; contains Pfam PF04535 : Domain of unknown
function (DUF588)
Length = 170
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 181 SFRYSEHLAIAVSYSPMTTLIYSCPPVRHQFLV 83
+FRY + IAV + + TL+++C VR + LV
Sbjct: 59 AFRYLVYAQIAVCAATLFTLVWACLAVRRRGLV 91
>At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A19)
Identical to Cytochrome P450 (SP:Q9T0K0) [Arabidopsis
thaliana]; similar to cytochrome P450LXXIA1, Persea
americana, M32885
Length = 490
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 364 VPFVXELDSLLGEDHXKLDGEVRFDDFL 281
+P + +D + G+DH + + RFD+FL
Sbjct: 224 IPSLSWIDKIRGQDHKMEEVDKRFDEFL 251
>At1g62250.2 68414.m07023 expressed protein
Length = 223
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 29 LCLPSSSPCVRWLLTPHLHQELMTYWR 109
LC P + +RW TP + E+++ WR
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWR 206
>At1g62250.1 68414.m07022 expressed protein
Length = 267
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 29 LCLPSSSPCVRWLLTPHLHQELMTYWR 109
LC P + +RW TP + E+++ WR
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWR 206
>At1g51610.1 68414.m05814 cation efflux family protein / metal
tolerance protein, putative (MTPc4) member of the cation
diffusion facilitator (CDF) family, or cation efflux
(CE) family, PMID:11500563
Length = 457
Score = 27.1 bits (57), Expect = 4.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 260 GXEVHGVPLAVFDQTLNGFLDNLSLLFLQIFRAFGD-SGLVFTN 132
G VH LA+FD+ NGF+D F + R+ GL+ TN
Sbjct: 25 GGSVHF--LALFDEKDNGFVDTTHRSFSSLIRSSSHVRGLISTN 66
>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
(UBP20) identical to ubiquitin-specific protease 20
GI:11993480 [Arabidopsis thaliana]
Length = 695
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = -2
Query: 238 LLPFSIRRLTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCPPVRHQF 89
L P+ +R + + +++ + + EH +V+Y ++ + S P + H F
Sbjct: 402 LQPY-MRNIQENEVSTKYHLYALVEHFGYSVAYGHYSSYVRSAPKIWHHF 450
>At3g07400.1 68416.m00882 lipase class 3 family protein contains
Pfam profile PF01764: Lipase
Length = 1003
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 94 DDVLADSCI*VSSLVNTRPLSPNALNI*RKRRERLSRKP 210
DDV D CI S + + PL N + ++ R KP
Sbjct: 162 DDVAEDECIEASEPIQSEPLKNNGEGLRNPKQLRQKPKP 200
>At1g31600.3 68414.m03879 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam profiles PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family, PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 431
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 173 IFRAFGDSGLVFTNDDTHIQLSASTSSVLGASVALEA 63
+F FG+ V+ DD+ +++ S + A ALEA
Sbjct: 130 VFAEFGEVNGVYAADDSGVRVIVSFADPFSAKAALEA 166
>At1g31600.2 68414.m03877 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam profiles PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family, PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 344
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 173 IFRAFGDSGLVFTNDDTHIQLSASTSSVLGASVALEA 63
+F FG+ V+ DD+ +++ S + A ALEA
Sbjct: 45 VFAEFGEVNGVYAADDSGVRVIVSFADPFSAKAALEA 81
>At1g31600.1 68414.m03878 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam profiles PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family, PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 431
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 173 IFRAFGDSGLVFTNDDTHIQLSASTSSVLGASVALEA 63
+F FG+ V+ DD+ +++ S + A ALEA
Sbjct: 130 VFAEFGEVNGVYAADDSGVRVIVSFADPFSAKAALEA 166
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 229 FSIRRLTASLITSPFFSFRYSEHLAIAVSYSPMTTLIY 116
F R+LTA+ + SP + F + + V +SP + ++
Sbjct: 365 FDRRKLTANGVGSPIYKFEGHKAAVLCVQWSPDKSSVF 402
>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
Similar to Arabidopsis luminal binding protein
(gb|D89342); contains Pfam domain PF00012: dnaK protein
Length = 678
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 120 MSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDF 254
M + + E K S+ KEK V+KEA++ L EN D+
Sbjct: 594 MKSTVADKEKLAKKISDEDKEKMEGVLKEALEWLEENVNAEKEDY 638
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,879,996
Number of Sequences: 28952
Number of extensions: 149121
Number of successful extensions: 496
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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