Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32608
         (307 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.28 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.4  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   4.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.28
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 292 PSLQGPCWPAPVCSCSGSGLPPPGRASSGVRGLPRLPSQHG 170
           PS   P  P P  S + SG+PP       +  +P +PS  G
Sbjct: 411 PSAGAPMPPIPNMS-NMSGMPPLPNMPGSMPTMPTMPSMAG 450


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -1

Query: 136 RPCPWHC 116
           +PCPW C
Sbjct: 233 KPCPWIC 239


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 159  RRQPPC*EGKRGSPRTPEEA--RPGGGRPDPEQEQTGAGQQGP 281
            ++Q P  + ++   + P++   +P   +P P+Q+Q    QQ P
Sbjct: 1501 QQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQP 1543



 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 265 APVCSCSGSGLPPPGRASSGVR 200
           AP C    + L  PG  S G+R
Sbjct: 367 APSCGGGPTILTTPGLDSDGIR 388


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 189 RGSPRTPEEARP 224
           RG+  TPEE RP
Sbjct: 12  RGNGGTPEEKRP 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.130    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,562
Number of Sequences: 438
Number of extensions: 1673
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)