Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32604
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    26   1.2  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   1.6  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    25   2.1  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   3.7  
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3...    23   8.6  

>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +2

Query: 134 DSVRSDARATAAKLKSKYENAGTAQG-IKCPVCSKFXLPDDIECHLVMCLTRP 289
           D   + + A+ AK  S+       +  + CP CS     + I  HL  CL  P
Sbjct: 130 DLASNSSPASIAKKTSRDSKKRKREDLVHCPACSNLVPHNQINQHLDSCLNSP 182


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 263 HLVMCLTRPRLSYNEDVL 316
           H +  LT PR S+NED+L
Sbjct: 727 HPIQTLTAPRQSFNEDLL 744


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 212 IKCPVCSKFXLPDDIECHL 268
           ++CPVC+K    +DI  HL
Sbjct: 7   VQCPVCAKTVTMNDINPHL 25


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 7   TNASRYVSSPLSHHPGP 57
           T  S Y  +P SHHP P
Sbjct: 272 TQHSHYDETPTSHHPDP 288


>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 103

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 215 KCPVCSKFXLPDDIECHLVMCLTRPRLSYNE 307
           +CP+C  F L   +  H   C    R  +NE
Sbjct: 76  RCPICGSFKLAHHLCSH---CFRNIRREFNE 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 916,656
Number of Sequences: 5004
Number of extensions: 11665
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)