Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32604
         (325 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194...    29   0.84 
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359...    29   0.84 
03_02_0105 - 5648436-5648536,5648650-5648692,5649152-5649244,564...    29   1.1  

>12_01_0268 -
           1941515-1941534,1941868-1942057,1942155-1942322,
           1943425-1943568,1944284-1944443,1944512-1944621,
           1944900-1945019,1945649-1945766,1946610-1946729,
           1947228-1947285,1947590-1947723,1949332-1949414,
           1949544-1949786,1949851-1949976,1950075-1951562
          Length = 1093

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 140 VRSDARATAAKLKSKYENAGTAQGIKCPVCSKFXLPDDIECHLVMC 277
           VR       A LKS+ EN  T     CP C K     D++  LV C
Sbjct: 835 VRYHIMQMEANLKSQLENTNTVDKYTCPNCGKSFSAFDVK-DLVSC 879


>06_01_0503 -
           3596664-3596837,3597647-3598069,3598362-3598595,
           3598720-3598993,3599390-3599523,3599572-3599634,
           3599759-3599846,3599919-3599989,3600898-3601010,
           3601836-3602004,3602580-3602671,3602819-3603295,
           3603736-3604090
          Length = 888

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 194 AGTAQGIKCPVCSKFXLPDD--IECHLVMCLTR 286
           AG A  + CPVC +     D  +  HL +CLTR
Sbjct: 92  AGAAGWVACPVCGESIRGTDYCVNTHLDICLTR 124


>03_02_0105 -
           5648436-5648536,5648650-5648692,5649152-5649244,
           5649424-5649553,5649631-5649747,5650667-5650715,
           5651139-5651229,5651381-5651473,5651565-5651611,
           5651719-5651779,5651973-5652051,5652184-5652284,
           5652409-5652476,5652593-5652650
          Length = 376

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 212 IKCPVCSKFXLPDDIECH 265
           + C VCS F LPD +E H
Sbjct: 108 LNCDVCSSFPLPDMLEAH 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,495,342
Number of Sequences: 37544
Number of extensions: 85754
Number of successful extensions: 185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)