Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32604
         (325 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical ...    58   1e-09
U89792-1|AAB94380.1|  339|Caenorhabditis elegans seven-in-absent...    29   0.58 
AC024759-5|AAK68432.1|  419|Caenorhabditis elegans Hypothetical ...    29   0.58 
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    28   1.3  
U40414-3|AAA81406.1|  321|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.10 protein.
          Length = 189

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +2

Query: 212 IKCPVCSKFXLPDDIECHLVMCLTRPRLSYNEDVLXD 322
           +KCPVC K    DD + HLVMCLTRP+++YN+DVL D
Sbjct: 104 MKCPVCHKVVPSDDADIHLVMCLTRPKITYNDDVLKD 140


>U89792-1|AAB94380.1|  339|Caenorhabditis elegans seven-in-absentia 
           protein homologue-1 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +2

Query: 215 KCPVCSKFXLPDDIEC---HLVMCLTRPRL 295
           +CPVC ++ LP  ++C   HLV    RP+L
Sbjct: 89  ECPVCLEYMLPPYMQCSSGHLVCSNCRPKL 118


>AC024759-5|AAK68432.1|  419|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.2 protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +2

Query: 215 KCPVCSKFXLPDDIEC---HLVMCLTRPRL 295
           +CPVC ++ LP  ++C   HLV    RP+L
Sbjct: 155 ECPVCLEYMLPPYMQCSSGHLVCSNCRPKL 184


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore complex
            protein protein6, isoform a protein.
          Length = 1562

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 274  HYEMALDVVR*XELAAHRTFYTLSCTGIFI 185
            H++ A D+ R   L +HR F+T++   I I
Sbjct: 1341 HFDEAFDIARQFNLDSHRLFFTMTREAIMI 1370


>U40414-3|AAA81406.1|  321|Caenorhabditis elegans Hypothetical
           protein F53B3.6 protein.
          Length = 321

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 6   HKRVSLCIVAAIAPPWAWDSA 68
           H RV  C    + PPW+++ A
Sbjct: 291 HHRVQCCCFKFVWPPWSYEQA 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,243,179
Number of Sequences: 27780
Number of extensions: 69151
Number of successful extensions: 222
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)