Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32598
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    87   7e-19
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    73   9e-15
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ...    31   0.062
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    26   1.8  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   2.3  
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    25   4.1  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   4.1  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    24   5.4  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    24   7.1  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    24   7.1  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    24   7.1  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    24   7.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    23   9.4  

>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 87.0 bits (206), Expect = 7e-19
 Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 5/94 (5%)
 Frame = +1

Query: 70  ATRAGAAQY-----STGVRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAVRG 234
           +T+A A  Y     + G   VT+I G GIGPEI  +V++IF+AAKVPIEWE V V  +  
Sbjct: 28  STKAAAGTYEGVKNANGNYTVTMIAGDGIGPEIAQSVERIFKAAKVPIEWERVKVYPIL- 86

Query: 235 PDGKFGIPQKAIDSVNANKIGLKGPLMTPXGKGY 336
            +G   IP  A +SV  NK+ LKGPL TP GKG+
Sbjct: 87  KNGTTTIPDDAKESVRKNKVALKGPLATPIGKGH 120


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 73.3 bits (172), Expect = 9e-15
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
 Frame = +1

Query: 103 GVRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWEEVDVTAVRGPDGKFG-IPQKAIDSV 279
           G   VTLIPG GIG E + AV +IF+ A VPIE+EE+DVT +   +   G    +AI S+
Sbjct: 19  GKYTVTLIPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSL 78

Query: 280 NANKIGLKGPLMTPXGKG 333
             NK+GLKG L TP  KG
Sbjct: 79  KRNKVGLKGILFTPFEKG 96


>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 362

 Score = 30.7 bits (66), Expect = 0.062
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
 Frame = +1

Query: 121 LIPGHGIGPEITVAVQKIFE--AAKVPIEWEEVDVTAVRGPDGKFG--IPQKAIDSVNAN 288
           LIP  GIG E+  A +++ E   AK  ++++ +D+ A  G   + G  +P++ ++ +   
Sbjct: 11  LIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTE 70

Query: 289 -KIGLKGPLMTPXGK 330
               L G + +P  K
Sbjct: 71  CNAALFGAVQSPTHK 85


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 109 RKVTLIPGHGIGPEITVAVQKIFEAAK 189
           +K+ ++PG  IGPEI  +  ++ +  +
Sbjct: 4   KKIVVLPGDHIGPEIVASALEVLKVVE 30


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 153 DLGPNTMSRDERNLAHASAVLSSAGS 76
           DL PN   +++RNL    A L   GS
Sbjct: 2   DLKPNIRRKEKRNLLKGEAALEKKGS 27


>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 217 VTAVRGPDGKFGIPQKAIDSVNANKIGLKGPL 312
           V+AVR P G FG    ++ +     I +KG L
Sbjct: 9   VSAVRTPMGSFGGSFASLPATKLGSIAIKGAL 40


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 207 LPFDRYFSCFEDFLNGDRDLGPNTMSR 127
           +  D  FS +ED  +GD ++ PNT ++
Sbjct: 1   MSIDADFSDYEDEASGDENVLPNTTTK 27


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 260 WGIPNLPSGPLTAVTSTSSHS 198
           W   N P  P T +TST S+S
Sbjct: 96  WSFKNFPFRPPTRLTSTPSNS 116


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
            Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 96   QHWRAQGYAHPW 131
            QHW+  GY++ W
Sbjct: 976  QHWQRNGYSNSW 987


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 54  DYSCSHFKNFRKLRRR 7
           +YS SH K+F+  RRR
Sbjct: 425 NYSASHIKSFQDQRRR 440


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 231 PNSCNIHFLPFDRYFSCFEDFLNG-DRDLGPN 139
           PN  +  F PF +Y +CF+D     + D  PN
Sbjct: 329 PNKIST-FKPFSKYPACFKDIAFWINNDFNPN 359


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 316 SSGDPSSQFYWH 281
           SS DP SQF WH
Sbjct: 69  SSIDPKSQFCWH 80


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 284  AFTESIAFWGIPNLPSGPLTAVTSTSS 204
            + + SIA   +   P+  +TAV+STSS
Sbjct: 1077 SLSSSIATASVTGSPTSSVTAVSSTSS 1103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,379,875
Number of Sequences: 5004
Number of extensions: 25127
Number of successful extensions: 69
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)