Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32598
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1120 - 34645676-34645768,34645880-34645966,34646443-346465... 29 0.71
04_04_1191 + 31599067-31600194 29 1.2
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 27 2.9
03_02_0291 + 7148768-7148853,7148966-7149170,7149823-7150238,715... 27 2.9
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 27 3.8
09_02_0543 + 10427321-10428315,10428440-10429154 27 5.0
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 27 5.0
08_02_0201 + 14200684-14201412 27 5.0
03_01_0645 - 4731037-4731543,4731706-4731933 27 5.0
01_01_0114 - 851249-852372,852577-852740,852838-853568 27 5.0
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 26 6.6
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416... 26 8.7
05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238 26 8.7
02_05_0705 - 31074246-31074296,31074632-31074770,31075636-310757... 26 8.7
>01_06_1120 -
34645676-34645768,34645880-34645966,34646443-34646508,
34647126-34647215,34647317-34647397,34647598-34647675,
34647788-34647878,34647969-34648110,34648479-34648590
Length = 279
Score = 29.5 bits (63), Expect = 0.71
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -2
Query: 276 RVNRFLGNTEFAIWTPNSCNIHFLPFDRYFSCFEDFLNGDRDLGPNTMSRDERNLAHASA 97
+++ + +FA+ TP S + LP ++ SC G+ + P T + + +L H
Sbjct: 55 QISHNVARFKFALPTPTS--VLGLPIGQHISCRGQDATGEEVIKPYTPTTLDSDLGHFEL 112
Query: 96 VLSSAGSGRW-HNFPDYSCSHFKNFR 22
V+ GR H+F + + + +
Sbjct: 113 VIKMYPQGRMSHHFREMKVGDYMSVK 138
>04_04_1191 + 31599067-31600194
Length = 375
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 290 LLAFTESIAFWGIPNLPSGPLTAVTSTS 207
LL E + FWG+PNL S P + TS
Sbjct: 290 LLTSLERLNFWGLPNLLSLPANLASLTS 317
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 198 DRYFSCFEDFLNGDRDLGPNTMSRDERNLAHASAVLSSAGSG 73
D++F CFE+ +N +LG + + ++ +A +S+ SG
Sbjct: 399 DQFFECFEELMNSQTNLGNSGIWDWTCSVFNAITFVSTLASG 440
>03_02_0291 +
7148768-7148853,7148966-7149170,7149823-7150238,
7150325-7150631,7150722-7151186
Length = 492
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Frame = +1
Query: 172 IFEAAKVPIEWE------EVDVTAVRGPDGKFGI-PQKAIDSVNANKI 294
I A V + WE EV++ V+ DG + + P+KA+D VN N I
Sbjct: 157 IITGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVDMVNENTI 204
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 27.1 bits (57), Expect = 3.8
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 52 IRKIVPATRAGA-AQYSTGVRKVTL---IPGHGIGPEITVA-VQKIFEAAKVPIE 201
+R I P RA A R VT+ P HGIG EI ++ V++ FE P+E
Sbjct: 278 LRSIRPLDRATINASVRKTNRLVTIEESFPQHGIGAEICMSVVEESFEYLDAPVE 332
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 67 PATRAGAAQYSTGVRKVTLIPGHGIG-PEITVAVQKIFE 180
PA AG QY G R V+ P HG E+ A +++E
Sbjct: 185 PAAAAGPRQYEYGERVVSDGPRHGAAYNELVAAGPRLYE 223
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 26.6 bits (56), Expect = 5.0
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +1
Query: 52 IRKIVPATRAGA-AQYSTGVRKVTL---IPGHGIGPEITVA-VQKIFEAAKVPIE 201
+R I P RA A R VTL P HG+G EI ++ V+ FE P+E
Sbjct: 273 LRSIRPLDRATINASVRKTNRLVTLEEGFPQHGVGAEICMSVVEDSFEYLDAPVE 327
>08_02_0201 + 14200684-14201412
Length = 242
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 97 STGVRKVTLIPGHGIGPEITVAVQKIFEAAKVPIE 201
+T V +V + HG GP + A+++ EA VP++
Sbjct: 157 NTTVVRVAMEGRHGFGPGLQGALEESEEAGNVPLD 191
>03_01_0645 - 4731037-4731543,4731706-4731933
Length = 244
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 64 VPATRAGAAQYSTGVRKVTLIPGHGIGPEITVAVQKIFEAAKVPIEWE 207
+P + A+ ++ RK + G G V ++ F+AA +P+EW+
Sbjct: 23 LPLVDSVASTATSKKRKRAGVDDVGEGESGEVGIELCFDAAPLPLEWQ 70
>01_01_0114 - 851249-852372,852577-852740,852838-853568
Length = 672
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 75 GRWHNFPDYSCSHFKNFRKLRRRA 4
GR H P +SC H K RRA
Sbjct: 32 GRHHKCPSFSCGHLKGVSAPFRRA 55
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 293 ILLAFTESIAFWGIPNLPSGPLTAVTS 213
+++A TESI W + +L PL +V S
Sbjct: 804 VVIAGTESIGLWDVNSLNPQPLLSVAS 830
>12_02_1128 -
26341118-26341204,26341302-26341441,26341567-26341663,
26341755-26341830,26341919-26342118,26342199-26342297,
26342395-26342479,26342786-26343024,26343233-26343403,
26343605-26343848,26343980-26344253,26344755-26344934,
26345342-26345423,26346209-26346278,26346802-26346901,
26347003-26347097,26347181-26347317,26347342-26347420,
26347591-26347651,26348580-26349009
Length = 981
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 242 PSGPLTAVTSTSSHSIGTLAASKIF*TAT--VISGPIPCPGMSV 117
PS P T + +AA+ I A+ V++GP P PG +V
Sbjct: 36 PSAPGTPTAMGAGGGAAPIAAAAIAAAASAAVVAGPRPAPGYTV 79
>05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238
Length = 490
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 156 RDLGPNTMSRDERNLAHASAVLSSAGSGR 70
R TM ++ER+L + VL+SA +GR
Sbjct: 291 RKKAAKTMQKEERDLQKFAGVLTSAPAGR 319
>02_05_0705 -
31074246-31074296,31074632-31074770,31075636-31075716,
31077228-31077401,31077501-31077649
Length = 197
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 130 GHGIGPE---ITVAVQKIFEAAKVPIEWEEVDVTAVR 231
G G+ PE I A+ K + ++P++W++ D+ ++
Sbjct: 118 GVGVTPEAQSIFDALSKTYILLRLPVQWDKTDIVVMK 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.136 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,314,985
Number of Sequences: 37544
Number of extensions: 177797
Number of successful extensions: 625
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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