Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32597
(300 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 33 0.012
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 28 0.26
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 28 0.26
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 27 0.78
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 26 1.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 1.4
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 1.8
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 25 3.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 24 4.2
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 23 9.6
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 23 9.6
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 23 9.6
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 23 9.6
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 32.7 bits (71), Expect = 0.012
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +3
Query: 237 PSHIKVNLPALSPTMESGSI 296
P+H +N+PALSPTM +G+I
Sbjct: 51 PAHTVINMPALSPTMTTGNI 70
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 28.3 bits (60), Expect = 0.26
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +3
Query: 60 RNQILSDGLKKAIRSNITRCISTELAKRKVTNKLLEHAQNQTVLSTPQWTVQMRYYSSLP 239
++ L D + IRS ++ LA +V + LE + + V T QW +M + +
Sbjct: 1060 KSPFLGDDEAREIRSKQSQGWGDVLADARVYHNWLEILETRGVKKTVQWCEEMHLHYTTL 1119
Query: 240 SHIKVNLPALS 272
I+ N LS
Sbjct: 1120 QQIRQNRNELS 1130
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 28.3 bits (60), Expect = 0.26
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 147 VTNKLLEHAQNQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSP-TMESGSI 296
V+NK L HAQ + S P Q + + S PS + +++P T+E+G++
Sbjct: 177 VSNKSLPHAQQSIIRSFPDIQKQPKGFFSYPSS---TVSSIAPSTLEAGNL 224
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 0.78
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Frame = +3
Query: 159 LLEHAQNQTVLSTP---QWTVQMRYY--SSLPSHIKV-NLPALSPTMESGSI 296
+L+H +Q V ++ +V+ RY+ S+L + +PALSPTME G+I
Sbjct: 1 MLKHYIHQCVKASSCKHSLSVKQRYFHCSALNGVASMFRMPALSPTMEEGNI 52
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 1.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 177 NQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSPT 278
N + +TP W V+ S+L + + + PAL P+
Sbjct: 646 NSSAANTPSWGVRKARASALNARSEEDFPALPPS 679
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 1.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 87 KKAIRSNITRCISTELAKRKVTN 155
K A+R+NI RC+ T + + N
Sbjct: 3460 KSAVRTNIERCVQTSIESKYYKN 3482
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 32 IDNVANNCVTESNLKRWS*ESYTVEH 109
I+NVANN + L WS Y V+H
Sbjct: 157 INNVANNSLKVKPLTLWSTLLYIVQH 182
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 24.6 bits (51), Expect = 3.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 102 SNITRCISTELAKRKVTNKLLEHAQNQTVLST 197
S +++C LA++++T L A QTV T
Sbjct: 461 SELSKCHEASLAEKQLTYNLAMEALEQTVRET 492
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.2 bits (50), Expect = 4.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 207 TVQMRYYSSLPSHIKVNLP 263
T+ + YY ++P HI+ N P
Sbjct: 468 TLGIEYYGNIPVHIQENAP 486
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 97 IAFLRPSLKI*FRNTIVRNI 38
+AFL+PSL R+T+ R++
Sbjct: 579 LAFLKPSLMTYVRSTVARSM 598
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 23.0 bits (47), Expect = 9.6
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = +3
Query: 63 NQILSDGLKKAIRSNITRCISTELAKRKVTNKLLEHAQNQTVLSTPQWTVQMRYYSSLPS 242
N +L+DG +++I I+T K++++ + STP + +++S P
Sbjct: 490 NTMLNDGSTAPAKNDIRNVINTNNLDAKLSDESELMIEKNKSYSTPASSTIPTFHTSQPL 549
Query: 243 HIKVNLP 263
+N+P
Sbjct: 550 -TSLNMP 555
>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 220
Score = 23.0 bits (47), Expect = 9.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -2
Query: 284 LHGWRKSWKVDLY 246
+ GW K+WK++ Y
Sbjct: 191 VRGWYKNWKIEEY 203
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 176 EPDSSIYTTMDCSDEVLFESTITY 247
E + SIY +++ +D LFE+T +
Sbjct: 989 EAEGSIYESLNHNDAKLFENTFEH 1012
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,261,145
Number of Sequences: 5004
Number of extensions: 23781
Number of successful extensions: 65
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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