Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32555
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    24   6.8  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    24   9.0  

>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 76  RTARARQHTHKTIRALQNTITDTEIT 153
           + A+  QH+   + +LQN++ +T +T
Sbjct: 112 KPAQMNQHSENVVVSLQNSLANTSMT 137


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -1

Query: 113  IVLCVCCRARAVRSSIRYIMSAVRFNIVATNARESVR 3
            I+ CVCCR   +  S  Y+  + + + V   + ++++
Sbjct: 933  ILQCVCCRFNLIIGSEYYVPQSHQSDSVNLTSNDAIK 969


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,010,483
Number of Sequences: 5004
Number of extensions: 12079
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)