Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32541
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047 31 0.55
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 30 0.96
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 30 1.3
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 30 1.3
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983... 29 1.7
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190... 29 2.2
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 28 5.1
>01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047
Length = 440
Score = 31.1 bits (67), Expect = 0.55
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -3
Query: 433 NFSHWHGVFFKYDKFIRIADNLVLTSGEFSCEPVQLEEFHPVVL*C 296
+F HW K +KF R DNL+L + QL FH + L C
Sbjct: 54 DFKHW-----KVEKFARFVDNLLLIRSKVDLHTFQLYWFHYLPLNC 94
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 30.3 bits (65), Expect = 0.96
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 68 DKLTTFFENFEFDASNSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVA 235
DKL E F +++ S EEIK+ ++ ++ + + H P N E + N A
Sbjct: 499 DKLPIPNEEFNPVNKSTILNSSEEIKHINIDEIMTKMNKTGHVPINPPDETEKNSA 554
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +2
Query: 68 DKLTTFFENFEFDASNSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDA 244
DKL E F +++ S EEIK+ ++ ++ + + H P N E + N A A
Sbjct: 496 DKLPIPNEEFNPVNKSTILNSSEEIKHINIDEIMTKLNKTGHVPINPPDETEKNSALTA 554
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +2
Query: 68 DKLTTFFENFEFDASNSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDA 244
DKL E F +++ S EEIK+ ++ ++ + + H P N E + N A A
Sbjct: 521 DKLPIPNEEFNPVNKSTILNSSEEIKHINIDEIMTKLNKTGHVPINPPDETEKNSALTA 579
>01_06_0496 -
29795490-29796638,29796811-29796870,29798168-29798371,
29798739-29798984,29799375-29799464
Length = 582
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 329 LDWFTTKLTAGQNKIIRNSNEFVIFKEDSVPMTEIMKM 442
+D F T +T KI RNS +F DSVP +++ ++
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315
>05_01_0251 +
1901709-1901864,1901968-1901999,1902534-1902664,
1902740-1902821,1902928-1903054,1903369-1903686,
1903785-1903846,1903988-1904074,1904139-1904195,
1906113-1906197,1906916-1907185,1908158-1908254,
1908390-1908436,1908826-1908939,1909024-1909117,
1909360-1909457,1910356-1910455,1911445-1911521,
1911824-1913122
Length = 1110
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 2 SQYQRPQHKLYFDGVKITDVKVDKLTTFFENFEFDASNSVYFSKEEIKNNHVHDVKV--R 175
S P + LY + V+I +L+ F N E + NS +FS K ++H++ R
Sbjct: 772 SDVANPPYFLYGNVVEIPKATWRQLSEFLYNVEPEFVNSQFFSALSRKEGYIHNLPTEGR 831
Query: 176 QPRLNHSPFNV 208
+ + SP +
Sbjct: 832 RNLVPRSPMTI 842
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 27.9 bits (59), Expect = 5.1
Identities = 8/24 (33%), Positives = 19/24 (79%)
Frame = +2
Query: 377 RNSNEFVIFKEDSVPMTEIMKMLD 448
RN+ + V++ ++S+P T +++M+D
Sbjct: 839 RNAGQVVLYPKESMPATHLLRMMD 862
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,684,345
Number of Sequences: 37544
Number of extensions: 240895
Number of successful extensions: 501
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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