Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32541
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006617-8|AAF39772.2| 309|Caenorhabditis elegans Hypothetical ... 33 0.092
Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z79694-8|CAB01965.1| 872|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z72506-9|CAA96622.1| 872|Caenorhabditis elegans Hypothetical pr... 29 2.0
X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin prot... 29 2.0
Z68119-7|CAA92193.2| 360|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z82090-6|CAB51468.1| 278|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z81526-10|CAB51464.1| 278|Caenorhabditis elegans Hypothetical p... 28 4.6
U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormon... 27 6.0
U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormon... 27 6.0
AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear recep... 27 6.0
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 27 8.0
>AC006617-8|AAF39772.2| 309|Caenorhabditis elegans Hypothetical
protein C39B5.9 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.092
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -3
Query: 463 RYFSFVEHLHNFSHWHGVFFKYDKFIRIADNLVLTSGEFSCEPVQLEEFHPVVL 302
+Y + HL NF + + F I+I D+L+ S SCE + + E HP+ L
Sbjct: 209 KYIEHLFHLQNFYIYEMIDFSTQAAIKIRDDLMRRSTFESCE-IYIREAHPIEL 261
>Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical
protein T15D6.9 protein.
Length = 407
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 17 PQHKLYFDGVKITDVKVDKLTTFFENFEFDASNSVYFSK 133
P HK G+ ++ +DKL ENFEF A N+ + K
Sbjct: 120 PHHKYILHGLNLSAAYIDKLPRNDENFEFRAFNTSTYPK 158
>Z79694-8|CAB01965.1| 872|Caenorhabditis elegans Hypothetical
protein F07A5.7 protein.
Length = 872
Score = 29.1 bits (62), Expect = 2.0
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +2
Query: 11 QRPQHKLYFDGVKITDVKVDKLTTFFENFEFDASNSVYFSKEEIKNNHVHDVKVRQPRLN 190
QR QH++ I ++ DK T F+A + +K E N HV+D+ ++ RL
Sbjct: 149 QRVQHEVIELTATIDQLQKDKHTAEKAAERFEAQANELANKVEDLNKHVNDLAQQRQRLQ 208
Query: 191 HSPFNVNIEV-DSNVASDAV--VKIFLAPKYDD 280
++ EV D V D + VK LA + ++
Sbjct: 209 AENNDLLKEVHDQKVQLDNLQHVKYTLAQQLEE 241
>Z72506-9|CAA96622.1| 872|Caenorhabditis elegans Hypothetical
protein F07A5.7 protein.
Length = 872
Score = 29.1 bits (62), Expect = 2.0
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +2
Query: 11 QRPQHKLYFDGVKITDVKVDKLTTFFENFEFDASNSVYFSKEEIKNNHVHDVKVRQPRLN 190
QR QH++ I ++ DK T F+A + +K E N HV+D+ ++ RL
Sbjct: 149 QRVQHEVIELTATIDQLQKDKHTAEKAAERFEAQANELANKVEDLNKHVNDLAQQRQRLQ 208
Query: 191 HSPFNVNIEV-DSNVASDAV--VKIFLAPKYDD 280
++ EV D V D + VK LA + ++
Sbjct: 209 AENNDLLKEVHDQKVQLDNLQHVKYTLAQQLEE 241
>X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin
protein.
Length = 882
Score = 29.1 bits (62), Expect = 2.0
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +2
Query: 11 QRPQHKLYFDGVKITDVKVDKLTTFFENFEFDASNSVYFSKEEIKNNHVHDVKVRQPRLN 190
QR QH++ I ++ DK T F+A + +K E N HV+D+ ++ RL
Sbjct: 165 QRVQHEVIELTATIDQLQKDKHTAEKAAERFEAQANELANKVEDLNKHVNDLAQQRQRLQ 224
Query: 191 HSPFNVNIEV-DSNVASDAV--VKIFLAPKYDD 280
++ EV D V D + VK LA + ++
Sbjct: 225 AENNDLLKEVHDQKVQLDNLQHVKYTLAQQLEE 257
>Z68119-7|CAA92193.2| 360|Caenorhabditis elegans Hypothetical
protein T18D3.3 protein.
Length = 360
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/46 (26%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +2
Query: 119 VYFSKEEIKN-NHVHDVKVRQPRLNHSPFNVNIEVDSNVASDAVVK 253
V+ S E+I+ VHD+++ ++ +V++E+D+N S ++++
Sbjct: 278 VFSSLEDIEGVKKVHDLRIWSLTMDKIALSVHLEIDANSQSQSILR 323
>Z82090-6|CAB51468.1| 278|Caenorhabditis elegans Hypothetical
protein ZK337.5 protein.
Length = 278
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 356 AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 475
AG NK NE ++ ++ + +TE+++ ++ KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260
>Z81526-10|CAB51464.1| 278|Caenorhabditis elegans Hypothetical
protein ZK337.5 protein.
Length = 278
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 356 AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 475
AG NK NE ++ ++ + +TE+++ ++ KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260
>U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform b protein.
Length = 413
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = -3
Query: 388 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 254
IR+++ L LT G C LEE HP + + YS ++FG D
Sbjct: 364 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 412
>U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform a protein.
Length = 429
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = -3
Query: 388 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 254
IR+++ L LT G C LEE HP + + YS ++FG D
Sbjct: 380 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 428
>AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear receptor
NHR-105 protein.
Length = 429
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = -3
Query: 388 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 254
IR+++ L LT G C LEE HP + + YS ++FG D
Sbjct: 380 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 428
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 189 TTAPSTLTLRLILMSPVTLLSKSSWLPNTMTTE 287
TT P+T T +P T ++++ P T TTE
Sbjct: 117 TTTPTTTTPTTTTTTPTTTTTETTTTPTTTTTE 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,029,355
Number of Sequences: 27780
Number of extensions: 220980
Number of successful extensions: 602
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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