Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32539
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   1.2  
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   2.1  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    25   2.1  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    24   4.9  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    24   4.9  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    24   4.9  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    23   8.6  

>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 92  QDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESQGVMGCGHRF 232
           +D   H  K      I+P  LLF F E NH +++   + ++  G ++
Sbjct: 345 EDSCFHKIKAAQWHQISPRSLLFQFQEQNHIHHKKIRRKLLAAGWKW 391


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 95  DKLVHLHKTPTSLDINPSGLLFAFVELNH 181
           D + H  K  +S   NPS LLF    L H
Sbjct: 59  DGIPHSRKKVSSAHFNPSTLLFLLKRLGH 87


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +2

Query: 71  LAKMAPSQDKLVHLH----KTPTSLDINPSGLLFAFVELNHYNNECESQ 205
           L +    ++KLV+L      T T LD +   ++ A V+ N Y N C+++
Sbjct: 170 LEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNK 218


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 1   DHDGFLVSNRLHTSVCLHAQYKNACQNGALTGQVSPSSQNTNI 129
           D  GF V +    +  L +Q+     NG+L+  +  S  N+ I
Sbjct: 35  DFSGFNVLSNSSANTDLSSQFFEQTNNGSLSSLIDTSYSNSQI 77


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 174 SSTNANKSPEGLMSNDVGVL*RWTNLSCEGAILASIFIL 58
           ++T  N  PE  +SN +  +  W N SC  + L SI  L
Sbjct: 113 NTTKQNVDPE--ISNALWSVLTWKNTSCSFSTLMSILAL 149


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 104 VHLHKTPTSLDINPSGLLFAFVELN 178
           VH H T  S + N  G +F+  ELN
Sbjct: 94  VHSHLTNNSTESNKKGKIFSRKELN 118


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 111 FTKHQHH*TSIPLDFYSHSW 170
           F    HH  SIP+DF    W
Sbjct: 114 FVGSVHHVNSIPIDFSPELW 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,254,813
Number of Sequences: 5004
Number of extensions: 22978
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)