Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32539
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical pr...    29   0.58 
U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    27   3.1  
U80446-5|AAK73881.1|  152|Caenorhabditis elegans Brother (drosop...    27   4.1  
Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical pr...    26   5.4  
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical
           protein K06B4.8 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 116 KTPTSLDINPSGLLFAFVELNHYNNEC 196
           KTP  LD     +L+ F+ELN  N EC
Sbjct: 232 KTPALLDQTSCMVLYKFIELNITNEEC 258


>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 43  VCLHAQYKNACQNGALTGQVSPSSQNTNIIR 135
           +CLH  +K  C N    G   PS+ N   +R
Sbjct: 69  ICLHKNFKKECFNFKGEGTAIPSTFNEETVR 99


>U80446-5|AAK73881.1|  152|Caenorhabditis elegans Brother
           (drosophila tx factor partner)homolog protein 1 protein.
          Length = 152

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 167 RMRIKVQRD*CLMMLVFCEDGLTCPVRAPFWQ 72
           R R+ V+RD   M L FC+ G+  PV+  + Q
Sbjct: 43  RFRVHVERD--EMPLTFCKTGINIPVKLEWSQ 72


>Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical
           protein T21H8.3 protein.
          Length = 364

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 217 LRPSICSLTMSAVCCSKLRIS*MMIXICLKTLRA 318
           ++PS C + M    CSK+R S +   + + T  A
Sbjct: 82  IKPSPCDMLMRTEFCSKIRASFLFAFLLVSTSHA 115


>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
            F58G4.1 protein.
          Length = 1974

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 59   NIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESQ 205
            N K+L  +   +DK+ HL+KT   L+     L            +CE Q
Sbjct: 1013 NRKLLEDIQAEEDKVNHLNKTKAKLESTLDELEDTLEREKRGRQDCEKQ 1061


>Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical
           protein F08G12.3 protein.
          Length = 422

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/36 (33%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = -1

Query: 320 SARKVFKQIXIIIQEILNFEQ-QTALIVSEQIDGRS 216
           S ++ +++I  ++QE L F+Q +T L+++ +I G S
Sbjct: 165 SIQQEYQKIHAVLQEYLQFQQTKTILLLAARIFGSS 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,165,133
Number of Sequences: 27780
Number of extensions: 136492
Number of successful extensions: 276
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)