Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32539
         (323 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   1.6  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   2.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   3.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +1

Query: 46  CLHAQYKNACQNGALTGQVSPSSQNTNIIRHQSLW---TFIRIRGTKSLQQ 189
           C++ Q  N C  G L G + P    +      S +   TF+R  G  S+ Q
Sbjct: 185 CIYVQSINLCMAGRLFGYLCPGMALSQFDLMGSPYRNLTFVRREGEFSVLQ 235



 Score = 20.6 bits (41), Expect = 4.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 83  PFWQAFLYC 57
           P W+ FLYC
Sbjct: 424 PKWRQFLYC 432


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 25  NRLHTSVCLHAQYKNACQNGALTGQVSPS 111
           N L  ++ +  Q       GA TG++SP+
Sbjct: 52  NILPNNISIAGQNTYKVAKGAFTGEISPA 80


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
          methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 54 VKAHAGVQTIRY 19
          VKA +GVQT+R+
Sbjct: 59 VKAISGVQTVRF 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,139
Number of Sequences: 438
Number of extensions: 1545
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)