Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32530
(331 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 76 7e-15
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 76 7e-15
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 73 6e-14
D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein. 64 3e-11
D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein. 64 3e-11
AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical ... 64 3e-11
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 56 8e-09
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 56 8e-09
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 56 8e-09
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 56 8e-09
AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical ... 56 8e-09
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 56 8e-09
AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical ... 31 0.26
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 28 1.4
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 28 1.4
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 28 1.4
U00046-11|AAK84562.1| 149|Caenorhabditis elegans Knl (kinetocho... 27 2.4
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 27 4.2
Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical pr... 26 5.5
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom... 26 5.5
AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans hom... 26 5.5
AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans hom... 26 5.5
Z50070-6|CAA90395.1| 548|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z36719-5|CAA85313.2| 351|Caenorhabditis elegans Hypothetical pr... 26 7.3
L15314-3|AAF99986.2| 393|Caenorhabditis elegans Gtp exchange fa... 26 7.3
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 75.8 bits (178), Expect = 7e-15
Identities = 37/53 (69%), Positives = 42/53 (79%)
Frame = -2
Query: 330 TTRLKEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDDLDXAFVEL 172
++RLKE RAEFAERSVQ LQKEVDRL DELV EKE+YK I ++LD F EL
Sbjct: 229 SSRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKERYKTISEELDSTFQEL 281
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 75.8 bits (178), Expect = 7e-15
Identities = 37/53 (69%), Positives = 42/53 (79%)
Frame = -2
Query: 330 TTRLKEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDDLDXAFVEL 172
++RLKE RAEFAERSVQ LQKEVDRL DELV EKE+YK I ++LD F EL
Sbjct: 229 SSRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKERYKTISEELDSTFQEL 281
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 72.5 bits (170), Expect = 6e-14
Identities = 36/53 (67%), Positives = 41/53 (77%)
Frame = -2
Query: 330 TTRLKEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDDLDXAFVEL 172
++RLKE RAEFAERSVQ LQKEVDRL DELV EKE+YK I ++LD EL
Sbjct: 229 SSRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKERYKTISEELDSNLPEL 281
>D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 63.7 bits (148), Expect = 3e-11
Identities = 29/53 (54%), Positives = 41/53 (77%)
Frame = -2
Query: 330 TTRLKEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDDLDXAFVEL 172
++RLKE RAEFAERSVQ LQKEVDRL DEL+ EKE+ +++ ++++ E+
Sbjct: 201 SSRLKEAETRAEFAERSVQKLQKEVDRLEDELLLEKERVRNLTEEIEQTVQEI 253
>D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 63.7 bits (148), Expect = 3e-11
Identities = 29/53 (54%), Positives = 41/53 (77%)
Frame = -2
Query: 330 TTRLKEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDDLDXAFVEL 172
++RLKE RAEFAERSVQ LQKEVDRL DEL+ EKE+ +++ ++++ E+
Sbjct: 201 SSRLKEAETRAEFAERSVQKLQKEVDRLEDELLLEKERVRNLTEEIEQTVQEI 253
>AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1e protein.
Length = 256
Score = 63.7 bits (148), Expect = 3e-11
Identities = 29/53 (54%), Positives = 41/53 (77%)
Frame = -2
Query: 330 TTRLKEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDDLDXAFVEL 172
++RLKE RAEFAERSVQ LQKEVDRL DEL+ EKE+ +++ ++++ E+
Sbjct: 201 SSRLKEAETRAEFAERSVQKLQKEVDRLEDELLLEKERVRNLTEEIEQTVQEI 253
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 55.6 bits (128), Expect = 8e-09
Identities = 30/53 (56%), Positives = 36/53 (67%)
Frame = -2
Query: 330 TTRLKEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDDLDXAFVEL 172
++RLKE RAEFAERSVQ LQKEVDRL + AE K + + D+LD EL
Sbjct: 229 SSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDELDHMVQEL 281
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 55.6 bits (128), Expect = 8e-09
Identities = 30/53 (56%), Positives = 36/53 (67%)
Frame = -2
Query: 330 TTRLKEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDDLDXAFVEL 172
++RLKE RAEFAERSVQ LQKEVDRL + AE K + + D+LD EL
Sbjct: 229 SSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDELDHMVQEL 281
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 55.6 bits (128), Expect = 8e-09
Identities = 30/53 (56%), Positives = 36/53 (67%)
Frame = -2
Query: 330 TTRLKEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDDLDXAFVEL 172
++RLKE RAEFAERSVQ LQKEVDRL + AE K + + D+LD EL
Sbjct: 229 SSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDELDHMVQEL 281
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 55.6 bits (128), Expect = 8e-09
Identities = 30/53 (56%), Positives = 36/53 (67%)
Frame = -2
Query: 330 TTRLKEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDDLDXAFVEL 172
++RLKE RAEFAERSVQ LQKEVDRL + AE K + + D+LD EL
Sbjct: 201 SSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDELDHMVQEL 253
>AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical
protein Y105E8B.1b protein.
Length = 193
Score = 55.6 bits (128), Expect = 8e-09
Identities = 30/53 (56%), Positives = 36/53 (67%)
Frame = -2
Query: 330 TTRLKEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDDLDXAFVEL 172
++RLKE RAEFAERSVQ LQKEVDRL + AE K + + D+LD EL
Sbjct: 138 SSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDELDHMVQEL 190
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 55.6 bits (128), Expect = 8e-09
Identities = 30/53 (56%), Positives = 36/53 (67%)
Frame = -2
Query: 330 TTRLKEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDDLDXAFVEL 172
++RLKE RAEFAERSVQ LQKEVDRL + AE K + + D+LD EL
Sbjct: 201 SSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDELDHMVQEL 253
>AF039041-2|AAP46270.1| 587|Caenorhabditis elegans Hypothetical
protein W03F8.10 protein.
Length = 587
Score = 30.7 bits (66), Expect = 0.26
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 327 TRLKEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGD-DLDXAF 181
TR+ + +FA++ ++ LQKEVD++ + ++K I + D+ AF
Sbjct: 81 TRISNITQAVDFAQKDLEHLQKEVDKVTKATIELEDKASKIKEADVLGAF 130
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 318 KEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDD 196
+E R + R V+ L +E +RL E+ K+KY+D+ ++
Sbjct: 658 EEFKTRIDELNRRVENLLRENNRLKSEVNPLKDKYRDLENE 698
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 318 KEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDD 196
+E R + R V+ L +E +RL E+ K+KY+D+ ++
Sbjct: 731 EEFKTRIDELNRRVENLLRENNRLKSEVNPLKDKYRDLENE 771
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 318 KEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDD 196
+E R + R V+ L +E +RL E+ K+KY+D+ ++
Sbjct: 731 EEFKTRIDELNRRVENLLRENNRLKSEVNPLKDKYRDLENE 771
>U00046-11|AAK84562.1| 149|Caenorhabditis elegans Knl (kinetochore
null) bindingprotein protein 1 protein.
Length = 149
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 318 KEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYK 211
K + R E R + L+KEV+ + EL+ E E Y+
Sbjct: 114 KSIEERNELLRRENENLKKEVNTVAAELLQEFESYE 149
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 297 EFAERSVQTLQKEVDRLXDELVAEKEKYKDI 205
E +R+ + L KEVD L EL E ++Y+D+
Sbjct: 248 ELEKRNAE-LSKEVDSLRRELQREHDRYEDL 277
>Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical
protein F23H12.6 protein.
Length = 1025
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = -2
Query: 198 DLDXAFVELILKE*ASVIQRLEV*VPWQHHQPAIQYSNIDSNLYFV 61
++D F+ ++K+ ASV + + + HH P Q+ ++ S ++
Sbjct: 600 NMDGFFIYCLIKDIASVSRHENPGLQYIHHSPIKQHGSLTSECCYI 645
>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform a protein.
Length = 1273
Score = 26.2 bits (55), Expect = 5.5
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Frame = -2
Query: 324 RLKEVXARAE-----FAERSVQTLQKEVDR-LXD---ELVAEKEKYKDIGDDLDXAFVEL 172
+LK+ A+ E F E +V ++K+ ++ L D EL+AEKEK K+ + L+ L
Sbjct: 148 KLKDKLAKLESEQDIFIENAVNEVEKKAEQELNDRLTELIAEKEKMKEQNEILEKNMDSL 207
Query: 171 ILKE*ASVIQRLEV 130
K + ++LE+
Sbjct: 208 ESKN-KDIQRKLEI 220
>AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform b protein.
Length = 619
Score = 26.2 bits (55), Expect = 5.5
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Frame = -2
Query: 324 RLKEVXARAE-----FAERSVQTLQKEVDR-LXD---ELVAEKEKYKDIGDDLDXAFVEL 172
+LK+ A+ E F E +V ++K+ ++ L D EL+AEKEK K+ + L+ L
Sbjct: 148 KLKDKLAKLESEQDIFIENAVNEVEKKAEQELNDRLTELIAEKEKMKEQNEILEKNMDSL 207
Query: 171 ILKE*ASVIQRLEV 130
K + ++LE+
Sbjct: 208 ESKN-KDIQRKLEI 220
>AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform c protein.
Length = 621
Score = 26.2 bits (55), Expect = 5.5
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Frame = -2
Query: 324 RLKEVXARAE-----FAERSVQTLQKEVDR-LXD---ELVAEKEKYKDIGDDLDXAFVEL 172
+LK+ A+ E F E +V ++K+ ++ L D EL+AEKEK K+ + L+ L
Sbjct: 148 KLKDKLAKLESEQDIFIENAVNEVEKKAEQELNDRLTELIAEKEKMKEQNEILEKNMDSL 207
Query: 171 ILKE*ASVIQRLEV 130
K + ++LE+
Sbjct: 208 ESKN-KDIQRKLEI 220
>Z50070-6|CAA90395.1| 548|Caenorhabditis elegans Hypothetical
protein F43G6.6 protein.
Length = 548
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 285 RSVQTLQKEVDRLXDELVAEKEKYKDIGDDLD 190
++V Q ++ D+L+ EK+K K GD+ D
Sbjct: 478 QNVMKAQTKIQETRDQLMGEKQKRKCRGDEND 509
>Z36719-5|CAA85313.2| 351|Caenorhabditis elegans Hypothetical
protein C06C3.6 protein.
Length = 351
Score = 25.8 bits (54), Expect = 7.3
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = +2
Query: 2 LFENKYHHVCMDFHNLKVRNTKYKL 76
+FEN+ HH+ H +++N +++
Sbjct: 136 IFENRQHHMIPKGHKFRIQNCAFRV 160
>L15314-3|AAF99986.2| 393|Caenorhabditis elegans Gtp exchange
factor for arfs protein1 protein.
Length = 393
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/50 (22%), Positives = 28/50 (56%)
Frame = -2
Query: 330 TTRLKEVXARAEFAERSVQTLQKEVDRLXDELVAEKEKYKDIGDDLDXAF 181
++R E +E + ++ ++K +L DE+ A K + +++ ++LD +
Sbjct: 2 SSRYSERNGLSETEKMTLPKVRKRKAQLVDEIEALKNEVREVDEELDQVY 51
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,355,272
Number of Sequences: 27780
Number of extensions: 101515
Number of successful extensions: 327
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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