Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32527
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    36   0.003
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    28   0.82 
SPAC1610.01 ||SPAC17A5.17|conserved fungal protein|Schizosacchar...    25   5.8  
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    25   7.6  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   7.6  

>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +1

Query: 4   PASGITCXEHNVVLVRVGRLKDCPGVETKV 93
           P  G    EH VVL+R GR +DCPGV+  V
Sbjct: 89  PGIGHNAQEHAVVLLRGGRAQDCPGVQYHV 118


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 11/52 (21%), Positives = 25/52 (48%)
 Frame = +1

Query: 205 NHLFQLRCQHNTLVECQNINKNVNSTTGSKKSHSPEKNRRNKLGGYTIQTRV 360
           N   Q+ CQ +++ +  +   ++NST  S   H  + N  N++   ++   +
Sbjct: 68  NDACQIACQESSVPDLSSSCDSINSTVESDAGHVVDSNSFNRIDNVSVNAPI 119


>SPAC1610.01 ||SPAC17A5.17|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 17/97 (17%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
 Frame = +1

Query: 31  HNVVLVRVGRLKDCPGVETKVCARQARPVTRH-----QTEXVGXEGHARNDHNNATDSSI 195
           +  + +   + KD P V  ++     RP+  H     ++     E  +  D N  TD  +
Sbjct: 77  YETITLHAKQSKDKPYVYVQLEGEAIRPLLDHILKFERSSGTLHEAPSTEDENEFTDDFL 136

Query: 196 QIQNHLFQLRCQHNTLVECQNINKNVNSTTGSKKSHS 306
           ++  ++  +   +  L  CQ+++ +  S+    ++ S
Sbjct: 137 ELTLYVTDVDSCYQALCTCQSLHPDTFSSDNDVENAS 173


>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 61  LKDCPGVETKVCARQARPVTRHQTEXVGXE 150
           L+D P V+ K+  +   P+T  Q E +  E
Sbjct: 119 LRDDPSVQQKLARQHQHPLTHEQGERLARE 148


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 28  EHNVVLVRVGRLKDCPGVETKVCARQARPVTR 123
           E+  +L+R+ R K+   V     +R+ARP+ R
Sbjct: 137 EYGSLLIRMQRWKEASEVFHAAVSREARPLVR 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,720,398
Number of Sequences: 5004
Number of extensions: 29529
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)