Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32527
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0146 + 23106325-23108154                                         29   1.9  
05_07_0292 - 29023935-29024102,29024974-29025048,29025147-290252...    29   2.5  
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042...    28   4.3  
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78...    27   10.0 
04_04_1209 + 31755637-31755821,31756017-31756165,31756703-317568...    27   10.0 
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191...    27   10.0 

>04_04_0146 + 23106325-23108154
          Length = 609

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 43  LVRVGRLKDCPGVETKVCARQARP 114
           L RVGR++D  GV  K+C R  +P
Sbjct: 320 LCRVGRIEDARGVFEKMCGRGMKP 343


>05_07_0292 -
           29023935-29024102,29024974-29025048,29025147-29025238,
           29025257-29025319,29025418-29025504,29025625-29025783,
           29025876-29025974,29026048-29026175,29027766-29028433
          Length = 512

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/77 (20%), Positives = 30/77 (38%)
 Frame = +1

Query: 130 TEXVGXEGHARNDHNNATDSSIQIQNHLFQLRCQHNTLVECQNINKNVNSTTGSKKSHSP 309
           +E +  E H   D  +   +++ + NHL+      +  V      K +  +   K + S 
Sbjct: 307 SEFLDSESHTHRDDGSTASTAVLVGNHLYVANVGDSRAV-ISKAGKAIALSEDHKPNRSD 365

Query: 310 EKNRRNKLGGYTIQTRV 360
           E+ R    GG  +   V
Sbjct: 366 ERKRIESAGGVVMWAEV 382


>04_04_1657 -
           35102751-35102868,35102987-35103504,35104065-35104211,
           35104289-35106262,35106964-35107089,35107178-35107264,
           35107335-35107424,35107725-35107811,35108248-35108300,
           35109339-35109387
          Length = 1082

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 3   AGIGHNLXGTQRGPGKSGKVKRLSRRGN 86
           +GIGHN   T R PG S K  ++  +GN
Sbjct: 700 SGIGHNKNNTPRIPGDS-KADKMDSKGN 726


>12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-780281,
            780377-780571,780681-780788,780935-781156,781669-781986,
            781988-782615,783059-783135,783161-783267,783491-783619,
            783763-783820,783902-783984,784458-784539,784617-784693,
            784827-784910,784999-785068,785146-785234,785319-786008,
            786485-786797
          Length = 1410

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 409  YSIDXTSRFRKC*LQ--IRLVFVLYTRRVCFAGSSQDCGSFWNRW 281
            YS+  +S  + C L+  +RL+ VL   R CF   +Q+     N+W
Sbjct: 1200 YSLPGSSVAKSCHLKRPMRLIDVLENFRKCFGTFAQEFQRMVNKW 1244


>04_04_1209 +
           31755637-31755821,31756017-31756165,31756703-31756845,
           31756902-31757024
          Length = 199

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 79  VETKVCARQARPVTRHQTEXVGXEGHARNDHNNATD 186
           + T+ CA + RP    ++E     GH R  ++ A D
Sbjct: 13  LSTRACAARPRPPMDRRSEAAERRGHGRAPYSAARD 48


>02_01_0285 -
           1913425-1914065,1914094-1914177,1914249-1915140,
           1915205-1915249,1915335-1915870,1915987-1916041
          Length = 750

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 269 MLTLPPVPKRATVLRRTGETNSAGIQYKHESDLKLTLXKP 388
           +L  PP P R  +    GET+S G      S  K  L KP
Sbjct: 594 LLPPPPPPPRPCLSSTVGETSSHGSCQAPPSHAKTALRKP 633


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,912,369
Number of Sequences: 37544
Number of extensions: 182846
Number of successful extensions: 497
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)