Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32527
(469 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 34 0.28
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 34 0.28
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 34 0.28
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 34 0.28
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 34 0.28
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 34 0.28
BC111750-1|AAI11751.1| 1025|Homo sapiens interferon induced with... 29 6.1
BC078180-1|AAH78180.1| 772|Homo sapiens IFIH1 protein protein. 29 6.1
AY017378-1|AAG54076.1| 1025|Homo sapiens RNA helicase-DEAD box p... 29 6.1
AF095844-1|AAG34368.1| 1025|Homo sapiens melanoma differentiatio... 29 6.1
AC010876-1|AAX93137.1| 435|Homo sapiens unknown protein. 29 6.1
AK131470-1|BAD18615.1| 458|Homo sapiens protein ( Homo sapiens ... 29 8.0
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 33.9 bits (74), Expect = 0.28
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 4 PASGITCXEHNVVLVRVGRLKDCPGVETKV 93
P G T EH +VLV GR +D PGV+ V
Sbjct: 96 PGEGHTLQEHQIVLVEGGRTQDLPGVKLTV 125
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 33.9 bits (74), Expect = 0.28
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 4 PASGITCXEHNVVLVRVGRLKDCPGVETKV 93
P G T EH +VLV GR +D PGV+ V
Sbjct: 96 PGEGHTLQEHQIVLVEGGRTQDLPGVKLTV 125
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 33.9 bits (74), Expect = 0.28
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 4 PASGITCXEHNVVLVRVGRLKDCPGVETKV 93
P G T EH +VLV GR +D PGV+ V
Sbjct: 96 PGEGHTLQEHQIVLVEGGRTQDLPGVKLTV 125
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 33.9 bits (74), Expect = 0.28
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 4 PASGITCXEHNVVLVRVGRLKDCPGVETKV 93
P G T EH +VLV GR +D PGV+ V
Sbjct: 96 PGEGHTLQEHQIVLVEGGRTQDLPGVKLTV 125
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 33.9 bits (74), Expect = 0.28
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 4 PASGITCXEHNVVLVRVGRLKDCPGVETKV 93
P G T EH +VLV GR +D PGV+ V
Sbjct: 96 PGEGHTLQEHQIVLVEGGRTQDLPGVKLTV 125
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 33.9 bits (74), Expect = 0.28
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 4 PASGITCXEHNVVLVRVGRLKDCPGVETKV 93
P G T EH +VLV GR +D PGV+ V
Sbjct: 96 PGEGHTLQEHQIVLVEGGRTQDLPGVKLTV 125
>BC111750-1|AAI11751.1| 1025|Homo sapiens interferon induced with
helicase C domain 1 protein.
Length = 1025
Score = 29.5 bits (63), Expect = 6.1
Identities = 25/103 (24%), Positives = 47/103 (45%)
Frame = +1
Query: 10 SGITCXEHNVVLVRVGRLKDCPGVETKVCARQARPVTRHQTEXVGXEGHARNDHNNATDS 189
+G C E N + + ++ D P VE ++ + +P + E G E ++ ++ DS
Sbjct: 198 TGSDCSESNAEIENLSQV-DGPQVEEQLLSTTVQP--NLEKEVWGMENNS--SESSFADS 252
Query: 190 SIQIQNHLFQLRCQHNTLVECQNINKNVNSTTGSKKSHSPEKN 318
S+ ++ + L E N N+ S +G+ S S E+N
Sbjct: 253 SVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEEN 295
>BC078180-1|AAH78180.1| 772|Homo sapiens IFIH1 protein protein.
Length = 772
Score = 29.5 bits (63), Expect = 6.1
Identities = 25/103 (24%), Positives = 47/103 (45%)
Frame = +1
Query: 10 SGITCXEHNVVLVRVGRLKDCPGVETKVCARQARPVTRHQTEXVGXEGHARNDHNNATDS 189
+G C E N + + ++ D P VE ++ + +P + E G E ++ ++ DS
Sbjct: 198 TGSDCSESNAEIENLSQV-DGPQVEEQLLSTTVQP--NLEKEVWGMENNS--SESSFADS 252
Query: 190 SIQIQNHLFQLRCQHNTLVECQNINKNVNSTTGSKKSHSPEKN 318
S+ ++ + L E N N+ S +G+ S S E+N
Sbjct: 253 SVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEEN 295
>AY017378-1|AAG54076.1| 1025|Homo sapiens RNA helicase-DEAD box
protein RH116 protein.
Length = 1025
Score = 29.5 bits (63), Expect = 6.1
Identities = 25/103 (24%), Positives = 47/103 (45%)
Frame = +1
Query: 10 SGITCXEHNVVLVRVGRLKDCPGVETKVCARQARPVTRHQTEXVGXEGHARNDHNNATDS 189
+G C E N + + ++ D P VE ++ + +P + E G E ++ ++ DS
Sbjct: 198 TGSDCSESNAEIENLSQV-DGPQVEEQLLSTTVQP--NLEKEVWGMENNS--SESSFADS 252
Query: 190 SIQIQNHLFQLRCQHNTLVECQNINKNVNSTTGSKKSHSPEKN 318
S+ ++ + L E N N+ S +G+ S S E+N
Sbjct: 253 SVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEEN 295
>AF095844-1|AAG34368.1| 1025|Homo sapiens melanoma differentiation
associated protein-5 protein.
Length = 1025
Score = 29.5 bits (63), Expect = 6.1
Identities = 25/103 (24%), Positives = 47/103 (45%)
Frame = +1
Query: 10 SGITCXEHNVVLVRVGRLKDCPGVETKVCARQARPVTRHQTEXVGXEGHARNDHNNATDS 189
+G C E N + + ++ D P VE ++ + +P + E G E ++ ++ DS
Sbjct: 198 TGSDCSESNAEIENLSQV-DGPQVEEQLLSTTVQP--NLEKEVWGMENNS--SESSFADS 252
Query: 190 SIQIQNHLFQLRCQHNTLVECQNINKNVNSTTGSKKSHSPEKN 318
S+ ++ + L E N N+ S +G+ S S E+N
Sbjct: 253 SVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEEN 295
>AC010876-1|AAX93137.1| 435|Homo sapiens unknown protein.
Length = 435
Score = 29.5 bits (63), Expect = 6.1
Identities = 25/103 (24%), Positives = 47/103 (45%)
Frame = +1
Query: 10 SGITCXEHNVVLVRVGRLKDCPGVETKVCARQARPVTRHQTEXVGXEGHARNDHNNATDS 189
+G C E N + + ++ D P VE ++ + +P + E G E ++ ++ DS
Sbjct: 198 TGSDCSESNAEIENLSQV-DGPQVEEQLLSTTVQP--NLEKEVWGMENNS--SESSFADS 252
Query: 190 SIQIQNHLFQLRCQHNTLVECQNINKNVNSTTGSKKSHSPEKN 318
S+ ++ + L E N N+ S +G+ S S E+N
Sbjct: 253 SVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEEN 295
>AK131470-1|BAD18615.1| 458|Homo sapiens protein ( Homo sapiens
cDNA FLJ16638 fis, clone TESTI4025865. ).
Length = 458
Score = 29.1 bits (62), Expect = 8.0
Identities = 18/80 (22%), Positives = 33/80 (41%)
Frame = +1
Query: 121 RHQTEXVGXEGHARNDHNNATDSSIQIQNHLFQLRCQHNTLVECQNINKNVNSTTGSKKS 300
RH E G +N+ ++ ++ I++Q H +L C T E + +NV
Sbjct: 349 RHAEELNGEINKIKNELSSLKETHIELQEHYNKL-CNQKTFEEDKKF-QNVPEVNNENSE 406
Query: 301 HSPEKNRRNKLGGYTIQTRV 360
S EK+ + Y + +
Sbjct: 407 MSTEKSENTIIQKYNTEQEI 426
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,591,869
Number of Sequences: 237096
Number of extensions: 1017709
Number of successful extensions: 2790
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2790
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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