Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32527
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.7  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 392 K*VSXVLASNPTRVCIVYPPSLFRRFFSGLW 300
           K V+ V AS P    +VYP ++     S +W
Sbjct: 399 KPVADVAASGPGLAFLVYPSAVLELPGSSIW 429


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/31 (22%), Positives = 15/31 (48%)
 Frame = -3

Query: 347 IVYPPSLFRRFFSGLWLFLEPVVELTFLFIF 255
           ++  P L  + +   W FL+ +  +   +IF
Sbjct: 153 VILDPKLIAKHYLRTWFFLDLISSIPLDYIF 183


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/31 (22%), Positives = 15/31 (48%)
 Frame = -3

Query: 347 IVYPPSLFRRFFSGLWLFLEPVVELTFLFIF 255
           ++  P L  + +   W FL+ +  +   +IF
Sbjct: 153 VILDPKLIAKHYLRTWFFLDLISSIPLDYIF 183


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/31 (22%), Positives = 15/31 (48%)
 Frame = -3

Query: 347 IVYPPSLFRRFFSGLWLFLEPVVELTFLFIF 255
           ++  P L  + +   W FL+ +  +   +IF
Sbjct: 153 VILDPKLIAKHYLRTWFFLDLISSIPLDYIF 183


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 17/76 (22%), Positives = 27/76 (35%)
 Frame = +1

Query: 73   PGVETKVCARQARPVTRHQTEXVGXEGHARNDHNNATDSSIQIQNHLFQLRCQHNTLVEC 252
            P  E K  A   +PV   + E    E    NDH   T+ S+ + N    +     +++  
Sbjct: 791  PKKERKT-ATTTQPVISSRKEQKKSEEKNINDHCVTTEQSVVVTNVTTTINTPTTSVISM 849

Query: 253  QNINKNVNSTTGSKKS 300
                  + S   S  S
Sbjct: 850  SGTTVPITSLPASSTS 865


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 392 K*VSXVLASNPTRVCIVYPPSLFRRFFSGLW 300
           K V+ V  S P    +VYP ++     S +W
Sbjct: 346 KPVADVAVSGPGLAFLVYPSAVLELPGSSIW 376


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 116 TGRACLAHTLVSTPGQSFNLPTLTRTTL 33
           T  A   +T  +T  +SF  PTLT + L
Sbjct: 617 TSSASRENTSNTTSMESFKPPTLTESLL 644


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,249
Number of Sequences: 438
Number of extensions: 1981
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)