Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32518
(489 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 41 1e-04
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 41 1e-04
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 41 1e-04
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 41 1e-04
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 41 1e-04
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 41 1e-04
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 41 1e-04
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 41 1e-04
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 41 1e-04
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 41 1e-04
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 41 1e-04
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 29 0.50
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.1
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 26 2.7
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 26 3.5
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 26 3.5
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 25 4.6
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 25 6.1
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 25 6.1
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 25 6.1
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 25 8.1
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 8.1
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 40.7 bits (91), Expect = 1e-04
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = -3
Query: 346 VKAVTGETDFHDILREFPEITRPAGM--LSTTFKHNTVHHIRTTPGPPVACKPRRLDPAR 173
V + E + DI +EF +IT L K T + + L P +
Sbjct: 365 VSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGK 424
Query: 172 MQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSLNARTIPDRY 5
MQA E L SG+ R S++ + + V KK+ R DY+ LN P+ Y
Sbjct: 425 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIY 480
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 40.7 bits (91), Expect = 1e-04
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = -3
Query: 346 VKAVTGETDFHDILREFPEITRPAGM--LSTTFKHNTVHHIRTTPGPPVACKPRRLDPAR 173
V + E + DI +EF +IT L K T + + L P +
Sbjct: 365 VSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGK 424
Query: 172 MQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSLNARTIPDRY 5
MQA E L SG+ R S++ + + V KK+ R DY+ LN P+ Y
Sbjct: 425 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIY 480
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 40.7 bits (91), Expect = 1e-04
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = -3
Query: 346 VKAVTGETDFHDILREFPEITRPAGM--LSTTFKHNTVHHIRTTPGPPVACKPRRLDPAR 173
V + E + DI +EF +IT L K T + + L P +
Sbjct: 365 VSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGK 424
Query: 172 MQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSLNARTIPDRY 5
MQA E L SG+ R S++ + + V KK+ R DY+ LN P+ Y
Sbjct: 425 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIY 480
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 40.7 bits (91), Expect = 1e-04
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = -3
Query: 346 VKAVTGETDFHDILREFPEITRPAGM--LSTTFKHNTVHHIRTTPGPPVACKPRRLDPAR 173
V + E + DI +EF +IT L K T + + L P +
Sbjct: 365 VSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGK 424
Query: 172 MQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSLNARTIPDRY 5
MQA E L SG+ R S++ + + V KK+ R DY+ LN P+ Y
Sbjct: 425 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIY 480
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 40.7 bits (91), Expect = 1e-04
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = -3
Query: 346 VKAVTGETDFHDILREFPEITRPAGM--LSTTFKHNTVHHIRTTPGPPVACKPRRLDPAR 173
V + E + DI +EF +IT L K T + + L P +
Sbjct: 365 VSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGK 424
Query: 172 MQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSLNARTIPDRY 5
MQA E L SG+ R S++ + + V KK+ R DY+ LN P+ Y
Sbjct: 425 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIY 480
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 40.7 bits (91), Expect = 1e-04
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = -3
Query: 346 VKAVTGETDFHDILREFPEITRPAGM--LSTTFKHNTVHHIRTTPGPPVACKPRRLDPAR 173
V + E + DI +EF +IT L K T + + L P +
Sbjct: 365 VSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGK 424
Query: 172 MQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSLNARTIPDRY 5
MQA E L SG+ R S++ + + V KK+ R DY+ LN P+ Y
Sbjct: 425 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIY 480
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 40.7 bits (91), Expect = 1e-04
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = -3
Query: 346 VKAVTGETDFHDILREFPEITRPAGM--LSTTFKHNTVHHIRTTPGPPVACKPRRLDPAR 173
V + E + DI +EF +IT L K T + + L P +
Sbjct: 365 VSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGK 424
Query: 172 MQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSLNARTIPDRY 5
MQA E L SG+ R S++ + + V KK+ R DY+ LN P+ Y
Sbjct: 425 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIY 480
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 40.7 bits (91), Expect = 1e-04
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = -3
Query: 346 VKAVTGETDFHDILREFPEITRPAGM--LSTTFKHNTVHHIRTTPGPPVACKPRRLDPAR 173
V + E + DI +EF +IT L K T + + L P +
Sbjct: 365 VSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGK 424
Query: 172 MQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSLNARTIPDRY 5
MQA E L SG+ R S++ + + V KK+ R DY+ LN P+ Y
Sbjct: 425 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIY 480
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 40.7 bits (91), Expect = 1e-04
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = -3
Query: 346 VKAVTGETDFHDILREFPEITRPAGM--LSTTFKHNTVHHIRTTPGPPVACKPRRLDPAR 173
V + E + DI +EF +IT L K T + + L P +
Sbjct: 365 VSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGK 424
Query: 172 MQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSLNARTIPDRY 5
MQA E L SG+ R S++ + + V KK+ R DY+ LN P+ Y
Sbjct: 425 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIY 480
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 40.7 bits (91), Expect = 1e-04
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = -3
Query: 346 VKAVTGETDFHDILREFPEITRPAGM--LSTTFKHNTVHHIRTTPGPPVACKPRRLDPAR 173
V + E + DI +EF +IT L K T + + L P +
Sbjct: 365 VSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGK 424
Query: 172 MQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSLNARTIPDRY 5
MQA E L SG+ R S++ + + V KK+ R DY+ LN P+ Y
Sbjct: 425 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIY 480
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 40.7 bits (91), Expect = 1e-04
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Frame = -3
Query: 346 VKAVTGETDFHDILREFPEITRPAGM--LSTTFKHNTVHHIRTTPGPPVACKPRRLDPAR 173
V + E + DI +EF +IT L K T + + L P +
Sbjct: 365 VSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGK 424
Query: 172 MQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSLNARTIPDRY 5
MQA E L SG+ R S++ + + V KK+ R DY+ LN P+ Y
Sbjct: 425 MQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIY 480
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 28.7 bits (61), Expect = 0.50
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +2
Query: 218 RCSSNMMNGVMLKCGREHTCWPCDFWELTQNIVEVSFTSDGFDRRKVFSHPDRCRD 385
R S + KC PC W L +I E+ +T+ +R F P+ C D
Sbjct: 1616 RLSYQRYKAIEEKCITLLDSLPCIVWTLDSDIGEIEYTN--ASKRNYFGVPEDCHD 1669
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 1.1
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 61 IRHLSSSPNVEQKTMHSLNAGLRRLPTYPRTLSSRLAYVLDPNVEACKQREV 216
+ ++SP +T HS + + R L SR++ V + +++ KQ EV
Sbjct: 676 VESAANSPITPPRTWHSPDFTSKSFEPIERKLPSRISEVTEDSIDEDKQNEV 727
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 2.7
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -3
Query: 412 IDGITSLSAVATPIGMTKDLPSVKAVTGETDFHDILREFPEITRPAGMLSTTF 254
+D + S+ AVA I T + T + DF + +RP G+L+ +F
Sbjct: 428 LDAVFSVGAVAAFIAFTVPIAIRVFFTKDADFRRGPWNLGKFSRPIGLLAVSF 480
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 3.5
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1
Query: 255 LSITPFIILELHRDLPLLASLDVWIQHVCKPRRKSSRIC 139
LSITP + E P+ S D H CK R++S+RIC
Sbjct: 390 LSITPQVT-EHDSKPPVRISYD----HRCKTRKQSTRIC 423
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 227 NYTGTSRCLQASTFGSSTYASREERVRGYVGKRR 126
N T S CLQ+ SS S R R Y+ ++R
Sbjct: 1094 NVTYPSECLQSFALKSSPQKSHWLRKRNYIAEKR 1127
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 25.4 bits (53), Expect = 4.6
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -1
Query: 465 WISCLTTTYSSIAENSVSLMASLLCLQSRHLSG*LKTFLLSKPSLVKLTSTIFCVS 298
+ + L YS +A +LM +L HL+ + LL L + ST FC+S
Sbjct: 160 YFTALNFNYSFLAATLCTLMVAL----DNHLATISRFILLDSMLLFFIISTFFCLS 211
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 144 ICWQAA*PGVQRVHGL 97
ICW A P V R+H L
Sbjct: 149 ICWDTAFPEVARIHAL 164
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 6.1
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = -3
Query: 310 ILREFPEITRPAGMLSTTFKHNTVHHIRTTPGPPVACKPRRLDPARMQAAKKEFEDMLAS 131
+L + EI A M T T +H+ G + + L+P K E D+L S
Sbjct: 3 VLEKIQEIE--AEMRRTQKNKATEYHLGLLKGKLAKLRAQLLEPTSKSGPKGEGFDVLKS 60
Query: 130 GVAR 119
G AR
Sbjct: 61 GDAR 64
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 25.0 bits (52), Expect = 6.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 353 KVFSHPDRCRDCRQRSDAINDTLFSAIDE*VVVRQ 457
+ F D+C+D S IND++ IDE V+ +Q
Sbjct: 141 ETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQ 175
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 24.6 bits (51), Expect = 8.1
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Frame = -1
Query: 315 TIFCVSSQKSQGQQVCSLPHLSITP--------FIILELHRDLPLLASLDVWIQHVCK 166
T SS+K Q V SL HL ITP I+ EL +D+ A +D+ + + K
Sbjct: 72 TFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVDLQAKKIFK 129
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 24.6 bits (51), Expect = 8.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 337 VTGETDFHDILREFPEITRPAGMLSTTFKH 248
+ T+F+DI+ P ITR + +F H
Sbjct: 658 IPAPTNFNDIISFIPSITRLNELSQVSFNH 687
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,303
Number of Sequences: 5004
Number of extensions: 44544
Number of successful extensions: 144
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -