Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32518
(489 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF303585-1|AAO32941.1| 959|Homo sapiens NCOR isoform c protein. 35 0.13
AF303584-1|AAO32940.1| 453|Homo sapiens NCOR isoform d protein. 35 0.13
AF087856-1|AAP97166.1| 2343|Homo sapiens nuclear receptor co-rep... 35 0.13
AF044209-1|AAC33550.1| 2440|Homo sapiens nuclear receptor co-rep... 35 0.13
AB028970-1|BAA82999.2| 2348|Homo sapiens KIAA1047 protein protein. 35 0.13
AB019524-1|BAA75814.1| 1467|Homo sapiens nuclear receptor co-rep... 35 0.13
DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase p... 34 0.23
AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein pro... 34 0.23
AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein... 33 0.40
AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein. 33 0.40
DQ058014-2|AAY87453.1| 135|Homo sapiens pol precursor protein. 33 0.53
AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein. 33 0.53
AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein. 33 0.53
AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein pro... 33 0.53
AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein pro... 33 0.53
AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein. 33 0.53
AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein. 33 0.53
AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein. 33 0.53
AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein. 33 0.53
AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein. 33 0.53
AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein. 33 0.53
AB040964-1|BAA96055.2| 1206|Homo sapiens KIAA1531 protein protein. 29 8.6
>AF303585-1|AAO32941.1| 959|Homo sapiens NCOR isoform c protein.
Length = 959
Score = 35.1 bits (77), Expect = 0.13
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -3
Query: 349 SVKAVTGETDFHDILREFPEITRPAGMLSTTFKHN--TVHHIRTTPGPPVACKPRRLDPA 176
SV +V E D+H + RP+ ST F +N T+ + +TP P+AC P ++ A
Sbjct: 871 SVSSVHSEGDYHRQTPGWAWEDRPSSTGSTQFPYNPLTMRMLSSTPPTPIACAPSAVNQA 930
>AF303584-1|AAO32940.1| 453|Homo sapiens NCOR isoform d protein.
Length = 453
Score = 35.1 bits (77), Expect = 0.13
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -3
Query: 349 SVKAVTGETDFHDILREFPEITRPAGMLSTTFKHN--TVHHIRTTPGPPVACKPRRLDPA 176
SV +V E D+H + RP+ ST F +N T+ + +TP P+AC P ++ A
Sbjct: 365 SVSSVHSEGDYHRQTPGWAWEDRPSSTGSTQFPYNPLTMRMLSSTPPTPIACAPSAVNQA 424
>AF087856-1|AAP97166.1| 2343|Homo sapiens nuclear receptor
co-repressor protein.
Length = 2343
Score = 35.1 bits (77), Expect = 0.13
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -3
Query: 349 SVKAVTGETDFHDILREFPEITRPAGMLSTTFKHN--TVHHIRTTPGPPVACKPRRLDPA 176
SV +V E D+H + RP+ ST F +N T+ + +TP P+AC P ++ A
Sbjct: 2255 SVSSVHSEGDYHRQTPGWAWEDRPSSTGSTQFPYNPLTMRMLSSTPPTPIACAPSAVNQA 2314
>AF044209-1|AAC33550.1| 2440|Homo sapiens nuclear receptor
co-repressor N-CoR protein.
Length = 2440
Score = 35.1 bits (77), Expect = 0.13
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -3
Query: 349 SVKAVTGETDFHDILREFPEITRPAGMLSTTFKHN--TVHHIRTTPGPPVACKPRRLDPA 176
SV +V E D+H + RP+ ST F +N T+ + +TP P+AC P ++ A
Sbjct: 2352 SVSSVHSEGDYHRQTPGWAWEDRPSSTGSTQFPYNPLTMRMLSSTPPTPIACAPSAVNQA 2411
>AB028970-1|BAA82999.2| 2348|Homo sapiens KIAA1047 protein protein.
Length = 2348
Score = 35.1 bits (77), Expect = 0.13
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -3
Query: 349 SVKAVTGETDFHDILREFPEITRPAGMLSTTFKHN--TVHHIRTTPGPPVACKPRRLDPA 176
SV +V E D+H + RP+ ST F +N T+ + +TP P+AC P ++ A
Sbjct: 2260 SVSSVHSEGDYHRQTPGWAWEDRPSSTGSTQFPYNPLTMRMLSSTPPTPIACAPSAVNQA 2319
>AB019524-1|BAA75814.1| 1467|Homo sapiens nuclear receptor
co-repressor protein.
Length = 1467
Score = 35.1 bits (77), Expect = 0.13
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -3
Query: 349 SVKAVTGETDFHDILREFPEITRPAGMLSTTFKHN--TVHHIRTTPGPPVACKPRRLDPA 176
SV +V E D+H + RP+ ST F +N T+ + +TP P+AC P ++ A
Sbjct: 1379 SVSSVHSEGDYHRQTPGWAWEDRPSSTGSTQFPYNPLTMRMLSSTPPTPIACAPSAVNQA 1438
>DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase
protein.
Length = 573
Score = 34.3 bits (75), Expect = 0.23
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
PV +L +++A + L G S S W+S + +++KK WR D R++
Sbjct: 33 PVWVNQWQLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 92
Query: 31 NA 26
NA
Sbjct: 93 NA 94
>AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1177
Score = 34.3 bits (75), Expect = 0.23
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
PV +L +++A + L G S S W+S + +++KK WR D R++
Sbjct: 956 PVWVNQWQLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 1015
Query: 31 NA 26
NA
Sbjct: 1016 NA 1017
>AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein
protein.
Length = 2294
Score = 33.5 bits (73), Expect = 0.40
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
PV L +++A + L G S S W+S + +++KK WR D R++
Sbjct: 956 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 1015
Query: 31 NARTIP 14
NA P
Sbjct: 1016 NALIQP 1021
>AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein.
Length = 596
Score = 33.5 bits (73), Expect = 0.40
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
PV L +++A + L G S S W+S + +++KK WR D R++
Sbjct: 32 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 91
Query: 31 NARTIP 14
NA P
Sbjct: 92 NALIQP 97
>DQ058014-2|AAY87453.1| 135|Homo sapiens pol precursor protein.
Length = 135
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
PV L +++A + L G S S W+S + +++KK WR D R++
Sbjct: 22 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 81
Query: 31 NA 26
NA
Sbjct: 82 NA 83
>AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
PV L +++A + L G S S W+S + +++KK WR D R++
Sbjct: 33 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 92
Query: 31 NA 26
NA
Sbjct: 93 NA 94
>AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
PV L +++A + L G S S W+S + +++KK WR D R++
Sbjct: 33 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 92
Query: 31 NA 26
NA
Sbjct: 93 NA 94
>AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1117
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
PV L +++A + L G S S W+S + +++KK WR D R++
Sbjct: 956 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 1015
Query: 31 NA 26
NA
Sbjct: 1016 NA 1017
>AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1879
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
PV L +++A + L G S S W+S + +++KK WR D R++
Sbjct: 956 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 1015
Query: 31 NA 26
NA
Sbjct: 1016 NA 1017
>AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
PV L +++A + L G S S W+S + +++KK WR D R++
Sbjct: 16 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 75
Query: 31 NA 26
NA
Sbjct: 76 NA 77
>AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
PV L +++A + L G S S W+S + +++KK WR D R++
Sbjct: 16 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 75
Query: 31 NA 26
NA
Sbjct: 76 NA 77
>AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
PV L +++A + L G S S W+S + +++KK WR D R++
Sbjct: 16 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 75
Query: 31 NA 26
NA
Sbjct: 76 NA 77
>AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein.
Length = 597
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
PV L +++A + L G S S W+S + +++KK WR D R++
Sbjct: 32 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 91
Query: 31 NA 26
NA
Sbjct: 92 NA 93
>AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
PV L +++A + L G S S W+S + +++KK WR D R++
Sbjct: 33 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 92
Query: 31 NA 26
NA
Sbjct: 93 NA 94
>AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 33.1 bits (72), Expect = 0.53
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
PV L +++A + L G S S W+S + +++KK WR D R++
Sbjct: 33 PVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAV 92
Query: 31 NA 26
NA
Sbjct: 93 NA 94
>AB040964-1|BAA96055.2| 1206|Homo sapiens KIAA1531 protein protein.
Length = 1206
Score = 29.1 bits (62), Expect = 8.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 235 HIRTTPGPPVACKPRRLDPARMQAAKKE 152
H +PGPP++ P RL P+ +AA+ +
Sbjct: 48 HALGSPGPPLSTPPARLGPSGRRAARPQ 75
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,269,369
Number of Sequences: 237096
Number of extensions: 1688344
Number of successful extensions: 8419
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 8281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8419
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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