Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32518
(489 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran... 61 9e-10
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 60 1e-09
AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein ... 57 1e-08
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein. 56 3e-08
AF541947-2|AAN34648.1| 407|Drosophila melanogaster truncated po... 56 3e-08
AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed... 53 2e-07
X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein pr... 52 6e-07
AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein ... 52 6e-07
X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein ( Dros... 51 1e-06
AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein ... 48 5e-06
X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros... 46 2e-05
AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein. 46 4e-05
AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p pro... 45 5e-05
Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia poly... 44 1e-04
AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed... 44 1e-04
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 41 8e-04
AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprot... 41 8e-04
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc... 39 0.004
X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D. m... 37 0.013
DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein ... 37 0.013
DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein ... 37 0.013
M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protei... 37 0.017
EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein ... 37 0.017
EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein ... 37 0.017
AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol pr... 37 0.017
AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein. 35 0.052
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 32 0.37
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 32 0.37
AE014298-1447|AAN09260.1| 1506|Drosophila melanogaster CG32681-P... 32 0.37
AY060880-1|AAL28428.1| 254|Drosophila melanogaster GM04207p pro... 30 1.5
AF005855-1|AAB81486.1| 274|Drosophila melanogaster anon2A5 prot... 30 1.5
AE014297-2240|AAF55341.3| 278|Drosophila melanogaster CG10340-P... 30 1.5
AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p pro... 28 6.0
AF312692-1|AAK28059.1| 1790|Drosophila melanogaster SPRINT-a pro... 28 6.0
AE014298-1464|AAS65425.1| 1789|Drosophila melanogaster CG33175-P... 28 6.0
>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
transcriptase protein.
Length = 1088
Score = 60.9 bits (141), Expect = 9e-10
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Frame = -3
Query: 265 STTFKHNTVHHIRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALH 86
S TF + H I+TT P+ K R + KK+ E ML + + S S WS+ +
Sbjct: 184 SLTFTNKITHTIKTTDDTPIHTKSYRYPYIHKEEVKKQIEAMLNQDIIKSSYSPWSAPVW 243
Query: 85 LVKKK-----DDGWRPCGDYRSLNARTIPDRY 5
+V KK + WR DYR LN +TI DRY
Sbjct: 244 VVPKKITPTGEQKWRLVIDYRKLNEKTISDRY 275
>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
transcriptase protein.
Length = 1217
Score = 60.5 bits (140), Expect = 1e-09
Identities = 35/90 (38%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = -3
Query: 259 TFKHNTVHHIRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLV 80
TF + H I T P+ K R KK+ E ML + R S S WS+ + +V
Sbjct: 300 TFTNKITHSIPTIDNTPIHTKSYRYPFVHKTEVKKQIESMLDQQIIRSSHSPWSAPVWVV 359
Query: 79 KKKDDG-----WRPCGDYRSLNARTIPDRY 5
KK DG WR DYR LN +TI DRY
Sbjct: 360 PKKLDGTGNRKWRLVIDYRKLNDKTISDRY 389
>AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein
protein.
Length = 1006
Score = 56.8 bits (131), Expect = 1e-08
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Frame = -3
Query: 310 ILREFPEITRPAGMLSTTFKHNTVHHIRTTPGPPVACKPRRLDPARMQAAKKEFEDMLAS 131
+L+EF ++ G TF +N H IRT+ PV KP P + + ++ML
Sbjct: 122 LLKEFQDLQYKKGD-QLTFTNNVKHTIRTSHNDPVYRKPYGYAPGLDTEVENQIKEMLDQ 180
Query: 130 GVARRSESAWSSALHLVKKKDD-----GWRPCGDYRSLNARTIPDRY 5
G+ R S S + S + +V KK D +R DYR LN TI D+Y
Sbjct: 181 GIIRESNSPYCSPIVVVPKKPDISGQKKYRIAIDYRYLNEITIADKY 227
>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
Length = 1494
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/69 (39%), Positives = 38/69 (55%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
P +C PRRL +K ++ L +G R S+S ++S + LVKKK R C D+R L
Sbjct: 716 PFSCSPRRLSYTEKDRLQKLLDEYLENGFIRPSDSEYASPIVLVKKKTGDLRMCVDFRKL 775
Query: 31 NARTIPDRY 5
N T+ D Y
Sbjct: 776 NKMTMKDNY 784
>AF541947-2|AAN34648.1| 407|Drosophila melanogaster truncated pol
protein protein.
Length = 407
Score = 55.6 bits (128), Expect = 3e-08
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = -3
Query: 259 TFKHNTVHHIRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLV 80
TF + H I TT P+ K R +K+ ML + + S S WS+ + +V
Sbjct: 168 TFSNAIKHSIPTTDNIPIHTKSYRYPFVHKDEVRKQISKMLEQNIIKNSHSPWSAPVWVV 227
Query: 79 KKKDDG-----WRPCGDYRSLNARTIPDRY 5
KK D WR D+R LN +T+ DRY
Sbjct: 228 PKKSDNIGEKKWRLVIDFRKLNEKTVSDRY 257
>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1065
Score = 52.8 bits (121), Expect = 2e-07
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Frame = -3
Query: 310 ILREFPEITRPAGMLSTTFKHNTVHHIRTTPGPPVACKPRRLDPARMQAAKKEFEDMLAS 131
+L EF +I G + TF T H I T P+ +P + + + + + +DM+
Sbjct: 163 VLYEFSDIQYKEGE-NLTFTSTTKHVITTKHEDPIYRRPYKYPQSFDEEVENQMKDMIRQ 221
Query: 130 GVARRSESAWSSALHLVKKKDDG-----WRPCGDYRSLNARTIPDRY 5
G+ R+S S + S + +V KK D +R DYR+LN T+ D+Y
Sbjct: 222 GIIRKSNSPYCSPVWVVPKKPDASGKSKFRIVIDYRNLNEITVDDKY 268
>X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein
protein.
Length = 1053
Score = 51.6 bits (118), Expect = 6e-07
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = -3
Query: 220 PGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDY 41
P V +P RL P + + + +++ + R S S ++S + LVKKK+ R C D+
Sbjct: 454 PTKTVQRRPYRLSPEEREVVRMQVSELIRCNIVRPSCSPFASPMLLVKKKNGTDRLCVDF 513
Query: 40 RSLNARTIPDRY 5
R LN+ TI D+Y
Sbjct: 514 RELNSNTISDKY 525
>AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein
protein.
Length = 1037
Score = 51.6 bits (118), Expect = 6e-07
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Frame = -3
Query: 325 TDFHDILREFPEITRPAGMLSTTFKHNTVHHIRTTPGPPVACKPRRLDPARMQAAKKEFE 146
+ ++++++F I G +F H I T P+ K + ++
Sbjct: 95 SSINELIQKFEHIFYKEGQ-DLSFTSEIKHRIITKNDLPIYSKTYKYPEIHKDEVNRQIA 153
Query: 145 DMLASGVARRSESAWSSALHLVKKKDDG-----WRPCGDYRSLNARTIPDRY 5
+ML G+ R S+S ++S L +V+KK D WR DYR LN TI DR+
Sbjct: 154 EMLDQGIIRHSKSPYNSPLWVVQKKMDQSNKQKWRLVVDYRKLNKETIEDRF 205
>X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein (
Drosophila melanogastertransposable element 297. ).
Length = 1059
Score = 50.8 bits (116), Expect = 1e-06
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = -3
Query: 259 TFKHNTVHHIRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLV 80
TF + H + TT P+ K L + + ++ML G+ R S S ++S +V
Sbjct: 190 TFTNTIKHVLNTTHNSPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVV 249
Query: 79 KKKDDG-----WRPCGDYRSLNARTIPDRY 5
KK D +R DYR LN TIPDRY
Sbjct: 250 PKKPDASGANKYRVVIDYRKLNEITIPDRY 279
>AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein
protein.
Length = 849
Score = 48.4 bits (110), Expect = 5e-06
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Frame = -3
Query: 313 DILREFPEITRPAGMLSTTFKHNTVHHIRTTPGPPVACKPRRLDPARMQAAKKEFEDMLA 134
++L F +I G +F + H I TT PV K + Q +++ ++ML
Sbjct: 136 NLLTRFKDIQFHEGD-KLSFTNQEKHTINTTHNIPVYSKMYSFQQSYEQEVERQIQEMLE 194
Query: 133 SGVARRSESAWSSALHLVKKKDDG-----WRPCGDYRSLNARTIPDRY 5
G+ R S S + S + +V KK D R DYR LN TI DRY
Sbjct: 195 QGIIRESSSPYCSPIWVVPKKLDASGQQKLRIVIDYRKLNEITINDRY 242
>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
Drosophila melanogastercopia-like element 17.6. ).
Length = 1058
Score = 46.4 bits (105), Expect = 2e-05
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = -3
Query: 259 TFKHNTVHHIRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLV 80
TF + T H I T P+ K A Q + + +DML G+ R S S ++S + +V
Sbjct: 192 TFTNQTKHTINTKHNLPLYSK-YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVV 250
Query: 79 KKKDDG-----WRPCGDYRSLNARTIPDRY 5
KK D +R DYR LN T+ DR+
Sbjct: 251 PKKQDASGKQKFRIVIDYRKLNEITVGDRH 280
>AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.
Length = 1003
Score = 45.6 bits (103), Expect = 4e-05
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 8/165 (4%)
Frame = -3
Query: 475 IIGVDFLSYYNLLVDCRKQRII--DGITSLSAVATPIGMTKDLPSVKAVTGETDFHDILR 302
IIG D L +VD + +I GI I + L + + + +L
Sbjct: 34 IIGDDTLKDLKAIVDRKNNCLIITPGIKIPLLARASINVNPLLAAEHPDGTQEILNSLLG 93
Query: 301 EFPEITRPAGMLSTTFKHNTVHHIRTTPGPPVACKPRRLDPARMQA-AKKEFEDMLASGV 125
EFP I P + + + IRT P+ K P M+ +++ +++L G+
Sbjct: 94 EFPRIFEPP-LSGMSVETAVKAEIRTNTQDPIYAKSYPY-PVNMRGEVERQIDELLQDGI 151
Query: 124 ARRSESAWSSALHLVKKK-----DDGWRPCGDYRSLNARTIPDRY 5
R S S ++S + +V KK + +R D++ LN TIPD Y
Sbjct: 152 IRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTY 196
>AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p
protein.
Length = 1026
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = -3
Query: 190 RLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSLNARTIPD 11
RL A KK+ E+ + + R+S S +S + +VKKKD R C DYR LN + D
Sbjct: 189 RLSEEEAIAVKKQVEEWVEQSIVRKSTSNVASRIVVVKKKDGTLRVCVDYRKLNTMVLMD 248
>Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia
polyprotein protein.
Length = 1333
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = -3
Query: 190 RLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSLNARTIPD 11
RL A KK+ E+ + + R+S S +S + +V+KKD R C DYR LN + D
Sbjct: 495 RLSEEEAIAVKKQVEEWVEQSIVRKSTSNVASRIVVVRKKDGTLRVCVDYRKLNTMVLMD 554
>AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1013
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Frame = -3
Query: 256 FKHNTVHHIRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVK 77
+ + V IRT P+ K E +++L +G+ ++S+S +++ + +V
Sbjct: 143 YNTSVVATIRTVDEEPIYAKLYPYPMGAADFVNGEIQELLKNGIIQKSKSPYNNPIWVVD 202
Query: 76 KK--DDG----WRPCGDYRSLNARTIPDRY 5
KK DD R D+R LN RT+PDRY
Sbjct: 203 KKGTDDAGNKKMRLVLDFRKLNERTVPDRY 232
>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
transcriptase-like polymeraseprotein.
Length = 1059
Score = 41.1 bits (92), Expect = 8e-04
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = -3
Query: 232 IRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDG--- 62
IRT P+ K + + K+ ++L G+ R S S ++S + +V KK D
Sbjct: 188 IRTISDTPIYSKFYQYPMSLKDEVHKQISELLHDGIIRPSRSPYNSPVWIVPKKLDSSGK 247
Query: 61 --WRPCGDYRSLNARTIPDRY 5
+R DYR LN T+ DRY
Sbjct: 248 KKYRVVIDYRKLNMVTVADRY 268
>AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprotein
protein.
Length = 437
Score = 41.1 bits (92), Expect = 8e-04
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = -3
Query: 232 IRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDG--- 62
IRT P+ K + + K+ ++L G+ R S S ++S + +V KK D
Sbjct: 31 IRTISDTPIYSKFYQYPMSLKDEVHKQISELLHDGIIRPSRSPYNSPVWIVPKKLDSSGK 90
Query: 61 --WRPCGDYRSLNARTIPDRY 5
+R DYR LN T+ DRY
Sbjct: 91 KKYRVVIDYRKLNMVTVADRY 111
>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
transcriptase polyprotein protein.
Length = 1041
Score = 38.7 bits (86), Expect = 0.004
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 12/169 (7%)
Frame = -3
Query: 475 IIGVDFLSYYNLLVDCRKQRI-----IDGITSLSAVATPIGMTKDLPSVKAVTGETDFHD 311
IIG+D L N +D + + + ++ I L + +++ ++ + FH
Sbjct: 97 IIGLDLLKQGNATLDFKNKTLNINNEVESIQFLRCDSVNFANIENIVVPNQISNK--FHT 154
Query: 310 ILRE-FPEITRPAGMLSTTFKHNTVHHIRTTPGPPVACKPRRLDPARMQAAKKEFEDMLA 134
+LR P L + N V IRT P+ K KE +L
Sbjct: 155 MLRNRLAVFAEPEEALP--YNTNIVATIRTEDDQPIYSKLYPYPMGVSDFVNKETHALLK 212
Query: 133 SGVARRSESAWSSALHLVKKK---DDG---WRPCGDYRSLNARTIPDRY 5
G+ R S S +++ + +V KK ++G R D+R LN +TI D+Y
Sbjct: 213 DGIIRPSSSPYNNPVWVVDKKGTDEEGNTKKRLVIDFRKLNLKTIDDKY 261
>X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D.
melanogaster retrotransposongypsy gene fragment for
reverse transcriptase-like enzyme.).
Length = 930
Score = 37.1 bits (82), Expect = 0.013
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Frame = -3
Query: 232 IRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKK--DDGW 59
IRT PV + E + +L G+ R S S ++S +V KK D
Sbjct: 154 IRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDASG 213
Query: 58 RPCG----DYRSLNARTIPDRY 5
P D+R LN +TIPDRY
Sbjct: 214 NPNKRLVIDFRKLNEKTIPDRY 235
>DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 37.1 bits (82), Expect = 0.013
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = -3
Query: 232 IRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKD-DGW- 59
IRT PV + E + +L G+ R S S ++S +V KK D +
Sbjct: 149 IRTVDNEPVYSRAYPNLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFG 208
Query: 58 ----RPCGDYRSLNARTIPDRY 5
R D+R LN RTIPDRY
Sbjct: 209 NPNKRLVIDFRKLNERTIPDRY 230
>DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 37.1 bits (82), Expect = 0.013
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = -3
Query: 232 IRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKD-DGW- 59
IRT PV + E + +L G+ R S S ++S +V KK D +
Sbjct: 149 IRTVDNEPVYSRAYPNLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFG 208
Query: 58 ----RPCGDYRSLNARTIPDRY 5
R D+R LN RTIPDRY
Sbjct: 209 NPNKRLVIDFRKLNERTIPDRY 230
>M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protein
protein.
Length = 1010
Score = 36.7 bits (81), Expect = 0.017
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = -3
Query: 232 IRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKD-DGW- 59
IRT PV + E + +L G+ R S S ++S +V KK D +
Sbjct: 149 IRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFG 208
Query: 58 ----RPCGDYRSLNARTIPDRY 5
R D+R LN +TIPDRY
Sbjct: 209 NPNKRLVIDFRKLNEKTIPDRY 230
>EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 36.7 bits (81), Expect = 0.017
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = -3
Query: 232 IRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKD-DGW- 59
IRT PV + E + +L G+ R S S ++S +V KK D +
Sbjct: 184 IRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFG 243
Query: 58 ----RPCGDYRSLNARTIPDRY 5
R D+R LN +TIPDRY
Sbjct: 244 NPNKRLVIDFRKLNEKTIPDRY 265
>EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 36.7 bits (81), Expect = 0.017
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = -3
Query: 232 IRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKD-DGW- 59
IRT PV + E + +L G+ R S S ++S +V KK D +
Sbjct: 184 IRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFG 243
Query: 58 ----RPCGDYRSLNARTIPDRY 5
R D+R LN +TIPDRY
Sbjct: 244 NPNKRLVIDFRKLNEKTIPDRY 265
>AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol
protein.
Length = 1463
Score = 36.7 bits (81), Expect = 0.017
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = -3
Query: 232 IRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKD-DGW- 59
IRT PV + E + +L G+ R S S ++S +V KK D +
Sbjct: 602 IRTVDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFG 661
Query: 58 ----RPCGDYRSLNARTIPDRY 5
R D+R LN +TIPDRY
Sbjct: 662 NPNKRLVIDFRKLNEKTIPDRY 683
>AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein.
Length = 994
Score = 35.1 bits (77), Expect = 0.052
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKK------DDGWRPC 50
PV K R+ ++ ++ + ++ G+ S S ++S L LV KK + WR
Sbjct: 69 PVYIKNYRMADSQKPEIARQVKKLIDDGIVEPSMSEYNSPLLLVPKKPLPNSTEKRWRLA 128
Query: 49 GDYRSLNARTIPDRY 5
DYR +N + + D++
Sbjct: 129 VDYRQINKKLLSDKF 143
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Frame = -3
Query: 232 IRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDG--- 62
+R PV K R ++++ + + + ++ + S S ++S L LV KK
Sbjct: 307 LRLKDDEPVYTKNYRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSD 366
Query: 61 ---WRPCGDYRSLNARTIPDRY 5
WR DYR +N + + D++
Sbjct: 367 KKKWRLVIDYRQINKKLLADKF 388
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
DNA polymerase protein.
Length = 1000
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Frame = -3
Query: 232 IRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDG--- 62
+R PV K R ++++ + + + ++ + S S ++S L LV KK
Sbjct: 70 LRLKDDEPVYTKNYRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSD 129
Query: 61 ---WRPCGDYRSLNARTIPDRY 5
WR DYR +N + + D++
Sbjct: 130 KKKWRLVIDYRQINKKLLADKF 151
>AE014298-1447|AAN09260.1| 1506|Drosophila melanogaster CG32681-PA
protein.
Length = 1506
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -3
Query: 193 RRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKD-DGWRPCGD-YRSLNART 20
RRLDPAR + EF +LAS A SES + + D + + PCG+ + +L R
Sbjct: 258 RRLDPARFRRISPEFFRILASYEAAMSESCPLYGISMHHWGDTEAYCPCGERHPNLKHRF 317
Query: 19 IPD 11
+ D
Sbjct: 318 LGD 320
>AY060880-1|AAL28428.1| 254|Drosophila melanogaster GM04207p
protein.
Length = 254
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 294 QKSQGQQVCSLPHLSITPFIILELHRDLPLLASLDVWIQH 175
QK Q +Q LPH +T + LEL D +W+++
Sbjct: 68 QKLQAEQAAELPHKKLTDIMKLELIEDKTAEEVSQIWLEY 107
>AF005855-1|AAB81486.1| 274|Drosophila melanogaster anon2A5
protein.
Length = 274
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 294 QKSQGQQVCSLPHLSITPFIILELHRDLPLLASLDVWIQH 175
QK Q +Q LPH +T + LEL D +W+++
Sbjct: 88 QKLQAEQAAELPHKKLTDIMKLELIEDKTAEEVSQIWLEY 127
>AE014297-2240|AAF55341.3| 278|Drosophila melanogaster CG10340-PA
protein.
Length = 278
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 294 QKSQGQQVCSLPHLSITPFIILELHRDLPLLASLDVWIQH 175
QK Q +Q LPH +T + LEL D +W+++
Sbjct: 92 QKLQAEQAAELPHKKLTDIMKLELIEDKTAEEVSQIWLEY 131
>AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p
protein.
Length = 825
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Frame = -3
Query: 232 IRTTPGPPVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKK------ 71
IR P K R ++ ++ ++ + + S ++S L LV KK
Sbjct: 201 IRLRDDEPSYIKNYRTPHSQQAEISRQVTKLIEDKIVEPAVSEYNSPLLLVPKKSLPDSK 260
Query: 70 DDGWRPCGDYRSLNARTIPDRY 5
+ WR DYR +N + + D++
Sbjct: 261 EKKWRLVIDYRQINKKLLADKF 282
>AF312692-1|AAK28059.1| 1790|Drosophila melanogaster SPRINT-a
protein.
Length = 1790
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -3
Query: 310 ILREFPEITRPAGMLSTTFKHNTVHHIRTTPGPPVACKPRRLDPARMQAAK 158
+ R P + +L+ F H +HH + P P P LD A + K
Sbjct: 241 VQRRLPIQSHQQRILNQRFHHQRMHHGTSEPIPSGVATPSSLDAASVDGGK 291
>AE014298-1464|AAS65425.1| 1789|Drosophila melanogaster CG33175-PA,
isoform A protein.
Length = 1789
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -3
Query: 310 ILREFPEITRPAGMLSTTFKHNTVHHIRTTPGPPVACKPRRLDPARMQAAK 158
+ R P + +L+ F H +HH + P P P LD A + K
Sbjct: 240 VQRRLPIQSHQQRILNQRFHHQRMHHGTSEPIPSGVATPSSLDSASVDGGK 290
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,522,432
Number of Sequences: 53049
Number of extensions: 513111
Number of successful extensions: 1578
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -