Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32518
(489 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 52 3e-07
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 52 3e-07
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 52 3e-07
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 31 0.34
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 31 0.34
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 29 2.4
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 28 3.2
U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule abnor... 28 3.2
U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule abnor... 28 3.2
L10986-7|AAA28014.2| 362|Caenorhabditis elegans Hypothetical pr... 28 3.2
AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein. 28 3.2
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 28 3.2
AC024202-1|AAF36029.1| 285|Caenorhabditis elegans Hypothetical ... 28 3.2
Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical p... 28 4.2
Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical p... 28 4.2
Z82266-14|CAD36490.1| 467|Caenorhabditis elegans Hypothetical p... 28 4.2
Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical p... 28 4.2
Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical p... 28 4.2
Z68213-8|CAA92439.3| 467|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 28 4.2
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 28 4.2
U23486-1|AAL38956.1| 265|Caenorhabditis elegans Hypothetical pr... 27 5.5
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 27 5.5
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr... 27 7.3
AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical... 27 7.3
AC024857-3|AAK31568.6| 611|Caenorhabditis elegans Hypothetical ... 27 7.3
Z35598-2|CAA84651.2| 656|Caenorhabditis elegans Hypothetical pr... 27 9.7
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 27 9.7
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 27 9.7
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 27 9.7
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 51.6 bits (118), Expect = 3e-07
Identities = 27/61 (44%), Positives = 34/61 (55%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
P+ KPR + A +K + ML V R S+S WSS + LVKKKD R C DYR +
Sbjct: 1028 PIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKV 1087
Query: 31 N 29
N
Sbjct: 1088 N 1088
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 51.6 bits (118), Expect = 3e-07
Identities = 27/61 (44%), Positives = 34/61 (55%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
P+ KPR + A +K + ML V R S+S WSS + LVKKKD R C DYR +
Sbjct: 931 PIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKV 990
Query: 31 N 29
N
Sbjct: 991 N 991
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 51.6 bits (118), Expect = 3e-07
Identities = 27/61 (44%), Positives = 34/61 (55%)
Frame = -3
Query: 211 PVACKPRRLDPARMQAAKKEFEDMLASGVARRSESAWSSALHLVKKKDDGWRPCGDYRSL 32
P+ KPR + A +K + ML V R S+S WSS + LVKKKD R C DYR +
Sbjct: 942 PIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKV 1001
Query: 31 N 29
N
Sbjct: 1002 N 1002
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
C10C6.1 protein.
Length = 1565
Score = 31.5 bits (68), Expect = 0.34
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = -3
Query: 292 EITRPAGMLSTTFKHNTVHHIRTTPGPPVACKPRRL---DPARMQAAKKEFEDMLASGVA 122
E RP+ + ST+ H+ HH +T VA P L P+ + AS
Sbjct: 1370 ETNRPSSLRSTSNSHHHHHHPASTSS--VASAPATLPSTTPSNLSRMASSSPSSSASNSG 1427
Query: 121 RRSESAWSSALHLVKKK 71
S +A SS + +VK+K
Sbjct: 1428 TSSPAATSSGISIVKQK 1444
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 31.5 bits (68), Expect = 0.34
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = -3
Query: 292 EITRPAGMLSTTFKHNTVHHIRTTPGPPVACKPRRL---DPARMQAAKKEFEDMLASGVA 122
E RP+ + ST+ H+ HH +T VA P L P+ + AS
Sbjct: 1370 ETNRPSSLRSTSNSHHHHHHPASTSS--VASAPATLPSTTPSNLSRMASSSPSSSASNSG 1427
Query: 121 RRSESAWSSALHLVKKK 71
S +A SS + +VK+K
Sbjct: 1428 TSSPAATSSGISIVKQK 1444
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 28.7 bits (61), Expect = 2.4
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -3
Query: 322 DFHDILREFPEITRPAGMLSTTFKHNTVHHIRTTPGPPVACKPRRLDPARMQAAKKEFED 143
+ ++LR+FPE+T ++T+ T + T PVA + + A + F D
Sbjct: 272 EMSEVLRDFPELTMEVEGVTTSIMKRTA-LVANTSNMPVAAREASIYTGITLA--EYFRD 328
Query: 142 M-LASGVARRSESAWSSAL 89
M L + S S W+ AL
Sbjct: 329 MGLNVAMMADSTSRWAEAL 347
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
C27H6.1 protein.
Length = 1657
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 192 DVWIQHVCKPRRKSSRICWQAA*PGVQRVHGLLLYIW*RRK 70
D+ ++H K + + CW+ P R+HGL LY++ +K
Sbjct: 1102 DLMVRHPIKKKSFMAERCWK---PCYVRLHGLTLYLYNDKK 1139
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 233 Y*NYTGTSRCLQASTFGSSTYASREE 156
Y Y+ RC+Q+ F STY S E+
Sbjct: 144 YERYSSDDRCIQSLVFNISTYGSSED 169
>U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule
abnormality protein 1,isoform a protein.
Length = 730
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -3
Query: 163 AKKEFEDMLASGVARRSESAWS--SALHLVKK 74
+KK FED GVA+ ESAW + L+KK
Sbjct: 322 SKKSFEDWDVVGVAKDLESAWKRRAIAELIKK 353
>U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule
abnormality protein 1,isoform b protein.
Length = 771
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -3
Query: 163 AKKEFEDMLASGVARRSESAWS--SALHLVKK 74
+KK FED GVA+ ESAW + L+KK
Sbjct: 363 SKKSFEDWDVVGVAKDLESAWKRRAIAELIKK 394
>L10986-7|AAA28014.2| 362|Caenorhabditis elegans Hypothetical
protein F10E9.3 protein.
Length = 362
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +1
Query: 58 AIRHLSSSPNVEQKTMHSLNAGLRRL---PTYPRTL 156
++RHLSS+P T S + G+R+ P PR+L
Sbjct: 148 SLRHLSSAPGTSASTSGSPSVGIRKYGVPPPMPRSL 183
>AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein.
Length = 730
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -3
Query: 163 AKKEFEDMLASGVARRSESAWS--SALHLVKK 74
+KK FED GVA+ ESAW + L+KK
Sbjct: 322 SKKSFEDWDVVGVAKDLESAWKRRAIAELIKK 353
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 233 Y*NYTGTSRCLQASTFGSSTYASREE 156
Y Y+ RC+Q+ F STY S E+
Sbjct: 144 YERYSSDDRCIQSLVFNISTYGSSED 169
>AC024202-1|AAF36029.1| 285|Caenorhabditis elegans Hypothetical
protein Y71H2B.8 protein.
Length = 285
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 1 RXTYQVSSSHSVIGNHHKDAIRHLSSSPNVEQKTMHSLNAGLRRL 135
R ++SSS SV + K A +++SP ++ ++H N R L
Sbjct: 166 RHRIEISSSESVTDKYIKTAFNLINNSPKLQVLSLHVNNLSERHL 210
>Z82266-17|CAJ80813.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 27.9 bits (59), Expect = 4.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 22 SSHSVIGNHHKDAIRHLSSSPN 87
+ HS+IG +HK + + ++PN
Sbjct: 63 NGHSIIGENHKKVVERIKANPN 84
>Z82266-16|CAJ80812.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 27.9 bits (59), Expect = 4.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 22 SSHSVIGNHHKDAIRHLSSSPN 87
+ HS+IG +HK + + ++PN
Sbjct: 63 NGHSIIGENHKKVVERIKANPN 84
>Z82266-14|CAD36490.1| 467|Caenorhabditis elegans Hypothetical
protein C01F6.6a protein.
Length = 467
Score = 27.9 bits (59), Expect = 4.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 22 SSHSVIGNHHKDAIRHLSSSPN 87
+ HS+IG +HK + + ++PN
Sbjct: 63 NGHSIIGENHKKVVERIKANPN 84
>Z68213-11|CAJ80817.1| 446|Caenorhabditis elegans Hypothetical
protein C01F6.6d protein.
Length = 446
Score = 27.9 bits (59), Expect = 4.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 22 SSHSVIGNHHKDAIRHLSSSPN 87
+ HS+IG +HK + + ++PN
Sbjct: 63 NGHSIIGENHKKVVERIKANPN 84
>Z68213-10|CAJ80816.1| 423|Caenorhabditis elegans Hypothetical
protein C01F6.6c protein.
Length = 423
Score = 27.9 bits (59), Expect = 4.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 22 SSHSVIGNHHKDAIRHLSSSPN 87
+ HS+IG +HK + + ++PN
Sbjct: 63 NGHSIIGENHKKVVERIKANPN 84
>Z68213-8|CAA92439.3| 467|Caenorhabditis elegans Hypothetical
protein C01F6.6a protein.
Length = 467
Score = 27.9 bits (59), Expect = 4.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 22 SSHSVIGNHHKDAIRHLSSSPN 87
+ HS+IG +HK + + ++PN
Sbjct: 63 NGHSIIGENHKKVVERIKANPN 84
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical protein
M110.4b protein.
Length = 1155
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 445 NLLVDCRKQRIIDGITSLSAVATPIGMTKDLPSVKAVTGE 326
+L+ KQ I+G T A + + +D P + VTGE
Sbjct: 1014 SLVSKTEKQAFIEGATRFCKFANDVELQQDYPKLWTVTGE 1053
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical protein
M110.4a protein.
Length = 1156
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 445 NLLVDCRKQRIIDGITSLSAVATPIGMTKDLPSVKAVTGE 326
+L+ KQ I+G T A + + +D P + VTGE
Sbjct: 1015 SLVSKTEKQAFIEGATRFCKFANDVELQQDYPKLWTVTGE 1054
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 27.9 bits (59), Expect = 4.2
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Frame = -3
Query: 454 SYYNLLVDCRKQRIIDGITS-LSAVATPI--GMTKDLPSVK--AVTGETDFHDILREFPE 290
+YY ++V ++ I++ T L V I + D P V VTG + P
Sbjct: 159 TYYVIIVQNGQRVIVNCATCRLCCVGRNITYSVVTDSPVVPPLVVTGTPSIVTVTPPSPS 218
Query: 289 IT---RPAGMLSTTFKHNTVHHIRTTPGP 212
+T RP TF +V +R TPGP
Sbjct: 219 VTPGGRPGSTPPATFPPGSVSTVRYTPGP 247
>U23486-1|AAL38956.1| 265|Caenorhabditis elegans Hypothetical
protein F07F6.7 protein.
Length = 265
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 412 IDGITSLSAVATPIGMTKDLPSVKAVTG 329
+DG+ SA+AT +G + D+ S AV G
Sbjct: 53 LDGLEKASAIATTVGSSVDIASGLAVFG 80
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 27.5 bits (58), Expect = 5.5
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Frame = -3
Query: 454 SYYNLLVDCRKQRIIDGITS-LSAVATPI--GMTKDLPSVK--AVTGETDFHDILREFPE 290
+YY ++V ++ I++ T L V I + D P V VTG + P
Sbjct: 82 TYYVIIVQNGQRVIVNCATCRLCCVGRNITYSVVTDSPVVPPLVVTGTPSIVTVTPPSPS 141
Query: 289 IT---RPAGMLSTTFKHNTVHHIRTTPGP 212
+T RP TF ++ +R TPGP
Sbjct: 142 VTPGGRPGSTPPATFPPGSISTVRYTPGP 170
>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
protein T16G12.1 protein.
Length = 1890
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 249 CLNVVESIPAGLVISGNSRRISWKSVSPVTALTEGRSLVIPIG 377
C N+ E+I + N R + W+ S +T+ T GR + IG
Sbjct: 609 CANMNENIQEERIKEPNKRAVQWELTS-ITSATYGRIIYDDIG 650
>AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical
protein Y73E7A.8 protein.
Length = 707
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 286 TRPAGMLSTTFKHNTVHHIRTTPGPPVACKPR 191
TRP +TT T ++TT PP+ PR
Sbjct: 383 TRPQTTKTTTTPQTTTTRLQTTRRPPIRVTPR 414
>AC024857-3|AAK31568.6| 611|Caenorhabditis elegans Hypothetical
protein Y71G12A.2 protein.
Length = 611
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 315 TIFCVSSQKSQGQQVCSLPHLSITPFIILELH 220
T + VS S Q +C + HL++ P I+ LH
Sbjct: 407 TWWTVSESLSICQLLCDVSHLNVAPVILSRLH 438
>Z35598-2|CAA84651.2| 656|Caenorhabditis elegans Hypothetical
protein F10F2.4 protein.
Length = 656
Score = 26.6 bits (56), Expect = 9.7
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +1
Query: 25 SHSVIGNHHKDAIRHLSSSPNVEQKTMHSLNAGLRRLPTYPRTLSSRLAYVLDPNVEACK 204
SH+V+ N IR +S P + Q ++SLN LP P L VL + C
Sbjct: 30 SHTVVCNRPSLLIRTVSMLPTIRQLHLNSLN-----LPQPPHFLFHPNLRVL--RMSRCG 82
Query: 205 QREVP 219
E+P
Sbjct: 83 MHEIP 87
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 332 SDGFDRR---KVFSHPDRCRDCRQRSDAINDTLFSAIDE 439
SDG R K+F PDR R++S I +TL DE
Sbjct: 871 SDGTPRNPYVKIFLLPDRSEKSRRQSAVIAETLMPVWDE 909
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 332 SDGFDRR---KVFSHPDRCRDCRQRSDAINDTLFSAIDE 439
SDG R K+F PDR R++S I +TL DE
Sbjct: 871 SDGTPRNPYVKIFLLPDRSEKSRRQSAVIAETLMPVWDE 909
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 332 SDGFDRR---KVFSHPDRCRDCRQRSDAINDTLFSAIDE 439
SDG R K+F PDR R++S I +TL DE
Sbjct: 871 SDGTPRNPYVKIFLLPDRSEKSRRQSAVIAETLMPVWDE 909
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,995,091
Number of Sequences: 27780
Number of extensions: 258942
Number of successful extensions: 840
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -